Skip to main content

Table 2 Selected results obtained from GO analysis

From: Transcriptome structure variability in Saccharomyces cerevisiae strains determined with a newly developed assembly software

GO category Characteristics of the category Genes p-value
GO:0006790 - Sulfur compound metabolic process Variable 5’-UTR in S. cerevisiae strains CYS3, MIS1, PHO3, THI2, MET6, YHR112C, BAT1, MET1, IRC7, GLO2, THI4, TRX2, YLL058W, GTT2, SAM1, GSH2, THI20, THI80, GLR1, THI6, MRI1, THI22 1.5*10−5 (6 g/l)
GO:0000947 - Amino acid catabolic process to alcohol via Ehrlich pathway Variable 5’-UTR in S. cerevisiae strains SFA1, ADH4, PDC5, ADH3, ADH1 6.4*10−4 (6 g/l)
GO:0016125 - Sterol metabolic process Highly conserved 5’-UTR in S. cerevisiae strains ERG28, NCP1, NSG1, UPC2, ERG26, ERG4, ERG20, HMG2, ERG5, ERG12, ERG8, MVD1, HES1, ERG10, DAP1 6.1*10−6 (6 g/l)
GO:0016125 - Sterol metabolic process Variable 5’-UTR in S. cerevisiae strains RSP5, ERG11, ERG7, ERG9, ERG25, ERG3, ERG27, ERG6, ERG2, CYB5, ERG24, IDI1, KES1 1.1*10−3 (6 g/l)
GO:0055085 - Transmembrane transport Conserved SAUT among strains at 6 g/l SUL1, YHK8, PDR11, VCX1, AZR1, PEX21, YMR279C, YNL095C, FRE7, CTR1 0.0052 (6 g/l)
GO:0031505 - Fungal-type cell wall organization Conserved SAUT among S. cerevisiae strains at 45 g/l TIP1, UTR2, SIM1, TAX4, SPO75, YLR194C, WSC2, HPF1 0.0059 (45 g/l)
GO:0006820 - Anion transport Conserved SAUT among S. cerevisiae strains at 45 g/l BAP2, SUL1, FAT3, FET3, YMR279C, ATO2, FAA1 0.019 (45 g/l)
GO:0022413 - Reproductive process in single cell organisms Conserved SAUTs among sensu stricto yeast species RRT12, SPO77, SMA2, PRM1 1.66*10−3
  1. Relevant results obtained from analysis of the enrichment of genes involved in selected GO processes. Enrichment was calculated with respect to the entire set of S. cerevisiae genes using YeastMine and the p-value is reported on the rightmost column (http://yeastmine.yeastgenome.org/yeastmine/begin.do).