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Table 2 Selected results obtained from GO analysis

From: Transcriptome structure variability in Saccharomyces cerevisiae strains determined with a newly developed assembly software

GO category

Characteristics of the category

Genes

p-value

GO:0006790 - Sulfur compound metabolic process

Variable 5’-UTR in S. cerevisiae strains

CYS3, MIS1, PHO3, THI2, MET6, YHR112C, BAT1, MET1, IRC7, GLO2, THI4, TRX2, YLL058W, GTT2, SAM1, GSH2, THI20, THI80, GLR1, THI6, MRI1, THI22

1.5*10−5 (6 g/l)

GO:0000947 - Amino acid catabolic process to alcohol via Ehrlich pathway

Variable 5’-UTR in S. cerevisiae strains

SFA1, ADH4, PDC5, ADH3, ADH1

6.4*10−4 (6 g/l)

GO:0016125 - Sterol metabolic process

Highly conserved 5’-UTR in S. cerevisiae strains

ERG28, NCP1, NSG1, UPC2, ERG26, ERG4, ERG20, HMG2, ERG5, ERG12, ERG8, MVD1, HES1, ERG10, DAP1

6.1*10−6 (6 g/l)

GO:0016125 - Sterol metabolic process

Variable 5’-UTR in S. cerevisiae strains

RSP5, ERG11, ERG7, ERG9, ERG25, ERG3, ERG27, ERG6, ERG2, CYB5, ERG24, IDI1, KES1

1.1*10−3 (6 g/l)

GO:0055085 - Transmembrane transport

Conserved SAUT among strains at 6 g/l

SUL1, YHK8, PDR11, VCX1, AZR1, PEX21, YMR279C, YNL095C, FRE7, CTR1

0.0052 (6 g/l)

GO:0031505 - Fungal-type cell wall organization

Conserved SAUT among S. cerevisiae strains at 45 g/l

TIP1, UTR2, SIM1, TAX4, SPO75, YLR194C, WSC2, HPF1

0.0059 (45 g/l)

GO:0006820 - Anion transport

Conserved SAUT among S. cerevisiae strains at 45 g/l

BAP2, SUL1, FAT3, FET3, YMR279C, ATO2, FAA1

0.019 (45 g/l)

GO:0022413 - Reproductive process in single cell organisms

Conserved SAUTs among sensu stricto yeast species

RRT12, SPO77, SMA2, PRM1

1.66*10−3

  1. Relevant results obtained from analysis of the enrichment of genes involved in selected GO processes. Enrichment was calculated with respect to the entire set of S. cerevisiae genes using YeastMine and the p-value is reported on the rightmost column (http://yeastmine.yeastgenome.org/yeastmine/begin.do).