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Table 2 Distribution of SNP and InDel markers on the interspecific BC 1 linkage map

From: Development of EST-based SNP and InDel markers and their utilization in tetraploid cotton genetic mapping

Chromosome Size (cM) Marker interval (cM) Total loci SNP loci HAU-SNP loci1) HAU-SNP loci2) HAU-InDel loci3) HAU-InDel loci4)
Chr01 186.87 2.46 76 3 1 2 0 0
Chr02 156.03 2.40 65 6 3 2 1 0
Chr03 156.23 2.06 76 5 2 2 1 0
Chr04 140.07 2.50 56 1 0 0 1 0
Chr05 242.76 1.75 139 6 1 2 3 0
Chr06 171.43 2.04 84 1 1 0 0 0
Chr07 103.39 1.48 70 4 2 2 0 0
Chr08 148.05 1.53 97 4 0 3 1 0
Chr09 148.83 1.43 104 9 2 3 3 1
Chr10 179.66 1.91 94 9 4 2 2 1
Chr11 234.77 1.63 144 7 1 2 4 0
Chr12 221.04 2.19 101 6 3 0 2 1
Chr13 208.14 2.12 98 5 2 2 1 0
AT genome 2297.27 1.91 1204 66 22 22 19 3
Chr14 156.15 1.63 96 4 1 0 2 1
Chr15 189.00 1.60 118 5 2 0 3 0
Chr16 94.32 0.99 95 5 4 1 0 0
Chr17 149.43 2.13 70 5 3 2 0 0
Chr18 146.95 1.47 100 6 3 2 0 1
Chr19 252.27 1.64 154 8 1 4 3 0
Chr20 107.50 1.00 108 6 3 0 2 1
Chr21 256.03 1.82 141 5 1 3 1 0
Chr22 166.03 1.84 90 3 1 0 2 0
Chr23 193.19 1.82 106 4 1 2 1 0
Chr24 187.04 1.64 114 3 1 1 1 0
Chr25 151.25 1.41 107 5 3 1 1 0
Chr26 197.09 1.70 116 8 1 3 3 1
DT genome 2246.24 1.59 1415 67 25 19 19 4
Total 4543.51 1.73 2619 133 47 41 38 7
  1. 1)HAU-SNP001 ~ 356.
  2. 2)HAU-SNP357 ~ 811.
  3. 3)HAU-InDel001 ~ 415.
  4. 4)HAU-InDel416 ~ 538.