Table 2 Distribution of SNP and InDel markers on the interspecific BC 1 linkage map
Chromosome | Size (cM) | Marker interval (cM) | Total loci | SNP loci | HAU-SNP loci1) | HAU-SNP loci2) | HAU-InDel loci3) | HAU-InDel loci4) |
|---|---|---|---|---|---|---|---|---|
Chr01 | 186.87 | 2.46 | 76 | 3 | 1 | 2 | 0 | 0 |
Chr02 | 156.03 | 2.40 | 65 | 6 | 3 | 2 | 1 | 0 |
Chr03 | 156.23 | 2.06 | 76 | 5 | 2 | 2 | 1 | 0 |
Chr04 | 140.07 | 2.50 | 56 | 1 | 0 | 0 | 1 | 0 |
Chr05 | 242.76 | 1.75 | 139 | 6 | 1 | 2 | 3 | 0 |
Chr06 | 171.43 | 2.04 | 84 | 1 | 1 | 0 | 0 | 0 |
Chr07 | 103.39 | 1.48 | 70 | 4 | 2 | 2 | 0 | 0 |
Chr08 | 148.05 | 1.53 | 97 | 4 | 0 | 3 | 1 | 0 |
Chr09 | 148.83 | 1.43 | 104 | 9 | 2 | 3 | 3 | 1 |
Chr10 | 179.66 | 1.91 | 94 | 9 | 4 | 2 | 2 | 1 |
Chr11 | 234.77 | 1.63 | 144 | 7 | 1 | 2 | 4 | 0 |
Chr12 | 221.04 | 2.19 | 101 | 6 | 3 | 0 | 2 | 1 |
Chr13 | 208.14 | 2.12 | 98 | 5 | 2 | 2 | 1 | 0 |
AT genome | 2297.27 | 1.91 | 1204 | 66 | 22 | 22 | 19 | 3 |
Chr14 | 156.15 | 1.63 | 96 | 4 | 1 | 0 | 2 | 1 |
Chr15 | 189.00 | 1.60 | 118 | 5 | 2 | 0 | 3 | 0 |
Chr16 | 94.32 | 0.99 | 95 | 5 | 4 | 1 | 0 | 0 |
Chr17 | 149.43 | 2.13 | 70 | 5 | 3 | 2 | 0 | 0 |
Chr18 | 146.95 | 1.47 | 100 | 6 | 3 | 2 | 0 | 1 |
Chr19 | 252.27 | 1.64 | 154 | 8 | 1 | 4 | 3 | 0 |
Chr20 | 107.50 | 1.00 | 108 | 6 | 3 | 0 | 2 | 1 |
Chr21 | 256.03 | 1.82 | 141 | 5 | 1 | 3 | 1 | 0 |
Chr22 | 166.03 | 1.84 | 90 | 3 | 1 | 0 | 2 | 0 |
Chr23 | 193.19 | 1.82 | 106 | 4 | 1 | 2 | 1 | 0 |
Chr24 | 187.04 | 1.64 | 114 | 3 | 1 | 1 | 1 | 0 |
Chr25 | 151.25 | 1.41 | 107 | 5 | 3 | 1 | 1 | 0 |
Chr26 | 197.09 | 1.70 | 116 | 8 | 1 | 3 | 3 | 1 |
DT genome | 2246.24 | 1.59 | 1415 | 67 | 25 | 19 | 19 | 4 |
Total | 4543.51 | 1.73 | 2619 | 133 | 47 | 41 | 38 | 7 |