| Accuracies obtained in cross-validation with various marker subsets | |||||
---|---|---|---|---|---|---|
Trait†| Number of markers (m) and subpopulation* | Association tests using pedigree information‡(CVSSA) | Association tests using genotypic information₸(CVSSK) | Markers with largest absolute effects (CVSSRRA) | Markers chosen randomly (CVSSRAN) | Markers with highest minor allele frequencies (CVSSHMAF) |
ADEN | m | 640 | 404 | 600 | 600 | 600 |
 | BG1 | 0.76 | 0.78 | 0.74 | 0.78 | 0.78 |
 | BG1 → BG2 | 0.20 | 0.06 | 0.03 | 0.06 | 0.16 |
 | S1 | 0.74 | 0.77 | 0.74 | 0.71 | 0.73 |
 | S1 → S2 | 0.55 | 0.51 | 0.52 | 0.58 | 0.61 |
AMFA | m | 406 | 359 | 600 | 600 | 600 |
 | BG1 | 0.74 | 0.78 | 0.72 | 0.75 | 0.74 |
 | BG1 → BG2 | 0.03 | 0.04 | 0.01 | −0.12 | 0.11 |
 | S1 | 0.73 | 0.76 | 0.69 | 0.65 | 0.66 |
 | S1 → S2 | 0.51 | 0.54 | 0.44 | 0.55 | 0.52 |
HT17 | m | 476 | 426 | 600 | 600 | 600 |
 | BG1 | 0.64 | 0.70 | 0.69 | 0.56 | 0.57 |
 | BG1 → BG2 | −0.03 | −0.04 | −0.07 | 0.00 | −0.19 |
 | S1 | 0.72 | 0.77 | 0.74 | 0.63 | 0.64 |
 | S1 → S2 | 0.28 | 0.29 | 0.29 | 0.32 | 0.29 |
DBH17 | m | 482 | 403 | 600 | 600 | 600 |
 | BG1 | 0.56 | 0.61 | 0.58 | 0.49 | 0.51 |
 | BG1 → BG2 | −0.12 | −0.13 | −0.25 | −0.05 | −0.23 |
 | S1 | 0.71 | 0.77 | 0.70 | 0.63 | 0.65 |
 | S1 → S2 | 0.17 | 0.18 | 0.18 | 0.22 | 0.20 |
MSE‡ |  | 0.025 | 0.024 | 0.023 | 0.024 | 0.023 |