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Table 1 An overview of read mapping

From: Gene expression profiles responses to aphid feeding in chrysanthemum (Chrysanthemum morifolium)

Sample ID Clean reads Total base pairs Total mapped reads Perfect match <=2 bp mismatch Unique match Multi-position match Total unmapped reads
CK 7,363,292 (100.00%) 360,801,308 (100.00%) 5,678,491 (77.12%) 3,591,545 (48.78%) 2,086,946 (28.34%) 3,743,517 (50.84%) 1,934,974 (26.28%) 1,684,801 (22.88%)
Y 7,215,860 (100.00%) 353,577,140 (100.00%) 5,444,023 (75.45%) 3,385,348 (46.92%) 2,058,675 (28.53%) 3,632,669 (50.34%) 1,811,354 (25.10%) 1,771,837 (24.55%)
Z 7,319,841 (100.00%) 358,672,209 (100.00%) 5,598,453 (76.48%) 3,510,566 (47.96%) 2,087,887 (28.52%) 3,699,741 (50.54%) 1,898,712 (25.94%) 1,721,388 (23.52%)
  1. CK: control; Y: aphid infestation treatment; Z: mock puncture treatment.