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Table 1 An overview of read mapping

From: Gene expression profiles responses to aphid feeding in chrysanthemum (Chrysanthemum morifolium)

Sample ID

Clean reads

Total base pairs

Total mapped reads

Perfect match

<=2 bp mismatch

Unique match

Multi-position match

Total unmapped reads

CK

7,363,292 (100.00%)

360,801,308 (100.00%)

5,678,491 (77.12%)

3,591,545 (48.78%)

2,086,946 (28.34%)

3,743,517 (50.84%)

1,934,974 (26.28%)

1,684,801 (22.88%)

Y

7,215,860 (100.00%)

353,577,140 (100.00%)

5,444,023 (75.45%)

3,385,348 (46.92%)

2,058,675 (28.53%)

3,632,669 (50.34%)

1,811,354 (25.10%)

1,771,837 (24.55%)

Z

7,319,841 (100.00%)

358,672,209 (100.00%)

5,598,453 (76.48%)

3,510,566 (47.96%)

2,087,887 (28.52%)

3,699,741 (50.54%)

1,898,712 (25.94%)

1,721,388 (23.52%)

  1. CK: control; Y: aphid infestation treatment; Z: mock puncture treatment.