Transcriptional response of soybean to thiamethoxam seed treatment in the presence and absence of drought stress

Stamm, Mitchell D; Enders, Laramy S; Donze-Reiner, Teresa J; Baxendale, Frederick P; Siegfried, Blair D; Heng-Moss, Tiffany M

doi:10.1186/1471-2164-15-1055

BMC Genomics

Table 4 Enrichment of GO Terms (FDR < 0.10) of DE upregulated genes in the thiamethoxam VC-V2, VC-V4, and V2-V2 comparisons

From: Transcriptional response of soybean to thiamethoxam seed treatment in the presence and absence of drought stress

a. Thiamethoxam VC-V2
GO ID	GO description	Gene ID	Gene name	Fold change
Cellular components and photosynthetic-related processes
GO:0009534	Chloroplast thylakoid	Glyma04g22110	Photosystem I protein	16.3
GO:0009579	Thylakoid	Glyma01g07130	Cytochrome b	3.0
GO:0015979	Photosynthesis	Glyma12g36140	Cytochrome b559	2.8
GO:0022900	Oxidation-reduction process	Glyma15g12130	Cytochrome b	2.8
GO:0022900	Electron transport chain
GO:0031976	Plastid thylakoid
GO:0034357	Photosynthetic membrane
GO:0042651	Thylakoid membrane
GO:0044436	Thylakoid part
b. Thiamethoxam VC-V4
GO ID	GO description	Gene ID	Gene name	Fold change
Biological processes related to carbohydrate synthesis
GO:0005975	Carbohydrate metabolic process	Glyma19g41100	Nucleotidyltransferase	6.1
GO:0006073	Cellular glucan metabolic process	Glyma06g13480	Glycosyltransferases	5.0
GO:0044042	Glucan metabolic process	Glyma15g43040	Cellulose synthase	3.3
GO:0044262	Cellular carbohydrate metabolic process	Glyma15g15820	Galactosyltransferase	3.2
GO:0044264	Cellular polysaccharide metabolic process	Glyma04g07220	Cellulose synthase	2.8
		Glyma02g47460	Nucleotidyltransferase	2.8
		Glyma06g03340	Nucleotidyltransferase	2.3
		Glyma12g36570	Cellulose synthase	2.0
Biological processes related to cell wall development
GO:0005618	Cell wall	Glyma06g05290	Glycosyl hydrolase family 10	6.2
GO:0010383	Cell wall polysaccharide metabolic process	Glyma04g05220	Glycosyl hydrolase family 10	5.8
GO:0044036	Cell wall macromolecule metabolic process	Glyma14g02070	Glycerophosphoryl diester phosphodiesterase	2.1
GO:0071554	Cell wall organization or biogenesis
c. Thiamethoxam V2-V4
GO ID	GO description	Gene ID	Gene name	Fold change
Cellular components related to cell membrane
GO:0012505	Endomembrane system	Glyma11g01230	Leucine rich repeat/protein tyrosine kinase	3.0
GO:0016021	Integral to membrane	Glyma09g28190	Cellulose synthase	2.4
GO:0031224	Intrinsic to membrane	Glyma08g34790	Leucine rich repeat/protein tyrosine kinase	2.1
GO:0044425	Membrane part	Glyma20g05530	HMG-CoA	2.1
Biological processes related membrane organization and lipid metabolism
GO:0004630	Phospholipase D activity	Glyma07g01310	Phospholipase D	3.2
GO:0006629	Lipid metabolic process	Glyma07g11580	Methyltransferase	2.8
GO:0042439	Ethanolamine-containing compound metabolic process	Glyma07g03490	Phospholipase D	2.6
GO:0046470	Phosphatidylcholine metabolic process	Glyma08g22600	Phospholipase D	2.3
		Glyma11g08640	Phospholipase D	2.2

These DE genes were present only in the three thiamethoxam-treated comparisons. Condensed list contains responsive genes possibly associated with the thiamethoxam seed treatment. The genes listed were in common among the GO IDs. Fold change is relative to soybean development (e.g., the earlier vegetative stage).

Back to article page

ISSN: 1471-2164

Contact us

Submission enquiries: bmcgenomics@biomedcentral.com
General enquiries: ORSupport@springernature.com