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Table 7 HyPhy [68] selection analysis using the SLAC, FEL, and REL methods

From: RNA-seq and high-definition mass spectrometry reveal the complex and divergent venoms of two rear-fanged colubrid snakes

   Subst. Total SLAC codons FEL codons REL codons
Toxins n model codons w>1; P<0 .05 w>1; P<0 .05 w>1; B F>100
SVMP-MP 18 REV 192 1 11 7
SVMP-DIS 17 HYK85 76 2 5 10
SVMP-ACR 17 HKY85 102 1 5 16
3FTx 11 REV 79 0 1 35
CTL 12 REV 137 0 2 0
Ficolin 7 REV 324 0 0 4
  1. Abbreviations: SLAC–single-likelihood ancestor counting, FEL–fixed-effects likelihood, REL–random-effects likelihood, SVMP–snake venom metalloproteinase, MP–metalloproteinase domain, DIS–disintegrin domain, ACR–cysteine-rich domain, 3FTx–three-finger toxin, CTL–C-type lectin, w–ratio of nonsynonyous to synonymous substitution rates, n–number of sequences (duplicates removed), BF–Bayes factor.