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Table 2 Genes with greater than 4-fold higher transcription during growth of R. albus 7 on cellulose compared to cellobiose as the sole carbohydrate source assessed by RNA-Seq

From: Unique aspects of fiber degradation by the ruminal ethanologen Ruminococcus albus 7 revealed by physiological and transcriptomic analysis

Gene (Rumal_) Annotation1 Fold Change2 Signal sequence3
1715 Indole-3-glycerol-phosphate synthase 15.50 No
1714 chorismate mutase 15.49 No
1716 anthranilate phosphoribosyltransferase 14.90 No
1712 tryptophan synthase subunit alpha 14.90 No
1713 tryptophan synthase subunit beta 14.10 No
1717 anthranilate synthase component I 13.62 No
3687 transcriptional regulator, ArsR family 11.53 No
3686 protein of unknown function DUF1648 11.32 Sec
0360 helix-turn-helix domain-containing protein 10.04 No
3688 protein of unknown function UCP033101 9.98 TM
2652 putative multiple sugar transport system substrate-binding protein 9.80 Sec
2572 ECF subfamily RNA polymerase sigma-24 subunit 8.82 No
2573 hypothetical protein 8.18 TM
0897 fibronectin type III domain-containing protein (CBM37) 7.93 Sec
3780 Resolvase domain 7.91 No
2448 Cellulase (GH9 CBM3 CBM37 CBM37) 7.70 Sec
3766 hypothetical protein 7.42 Sec
0953 hypothetical protein 7.00 Sec
3796 ABC transporter family protein 5.91 No
1569 Cellulase (GH9 CBM37) 5.56 Sec
3775 ABC transporter family protein 5.53 No
3757 Endo-1,4-beta-xylanase (GH11 CBM22 GH10 CBM37) 5.51 Sec
3776 IstB domain protein ATP-binding protein 5.21 No
0896 Cellulase (GH5 CBM37) 5.15 Sec
1952 fibronectin type III domain-containing protein (PL1 CBM37) 5.00 Sec
3963 hypothetical protein 4.84 TM
1427 hypothetical protein 4.74 TM
0487 Ricin B lectin (CE12 CBM13 CBM35 CE12) 4.74 Sec
3179 Capsule synthesis protein CapA 4.68 No
2739 endo-1,4-beta-xylanase (GH11 CBM22 CE1 CBM37) 4.63 Sec
1262 fibronectin type III domain-containing protein (PL11 CBM37) 4.61 Sec
0908 endo-1,4-beta-xylanase (GH11 CBM22 CE4 CBM37) 4.59 Sec
3944 chaperone protein DnaK 4.48 No
1426 hypothetical protein 4.37 Sec
1821 family 1 extracellular solute-binding protein 4.36 Sec
3777 Integrase catalytic region 4.33 No
1428 hypothetical protein 4.30 TM
1602 transaldolase 4.26 No
2599 glycoside hydrolase family 5 (GH5 CBM37) 4.23 Sec
3940 hypothetical protein 4.22 No
3798 IS66 Orf2 family protein 4.22 No
3186 family 1 extracellular solute-binding protein 4.18 Sec
1951 fibronectin type III domain-containing protein (CBM37) 4.17 Sec
3184 binding-protein-dependent transport systems inner membrane component 4.16 TM
3185 binding-protein-dependent transport systems inner membrane component 4.12 No
3774 hypothetical protein 4.10 No
1044 spore coat protein CotH (CBM37) 4.09 Tat
3263 hypothetical protein 4.02 No
  1. 1Each gene reported here was significantly DE, with a PP of DE greater than 0.95
  2. 2Predicted signal sequence predicted by PRED-TAT. Sec = Sec-dependent; TM = transmembrane.
  3. 3Genes containing predicted CBM37 domains are presented in bold.