Chromosome | Physical position (AGPv2) | Allelea | Effectb | P-value | RMIP | Genic position | Inside QTLc | Nearest gene ID | Position of nearest gene (AGPv2) | Annotation | |
---|---|---|---|---|---|---|---|---|---|---|---|
Start | End | ||||||||||
1 | 59772038 | T/C | 0.09 | 9.4E-10 | 0.35 | Intergenicd | N | GRMZM2G134671 | 59764838 | 59769739 | CCT/B-box zinc finger protein |
1 | 90059294 | C/T | 0.08 | 8.5E-14 | 0.35 | Intergenic | Y | GRMZM5G806839 | 90108398 | 90107598 | AP2 domain containing protein |
2 | 34246559 | A/C | 0.11 | 1.8E-16 | 0.39 | Intergenic | N | GRMZM5G876621 | 34361966 | 34343251 | IBR domain-containing protein |
2 | 36938074 | G/A | 0.10 | 1.4E-22 | 0.53 | 3’UTR | Y | GRMZM2G022627 | 36936010 | 36938218 | Transducin/WD40 repeat-like superfamily protein |
2 | 204757213 | G/A | 0.11 | 4.5E-09 | 0.41 | Intergenic | N | GRMZM2G142932 | 204771189 | 204767728 | Basic helix-loop-helix (bHLH) DNA-binding protein |
2 | 207520001 | CNV- | 0.11 | 4.4E-09 | 0.28 | Intergenic | Y | GRMZM2G062156 | 207635000 | 207637178 | Transporter family protein |
3 | 16574125 | T/C | 0.12 | 1.8E-26 | 0.43 | Non-synonymous_codinge | Y | GRMZM2G463580 | 16575869 | 16572429 | Leucine-rich repeat transmembrane protein kinase |
3 | 16575842 | C/G | 0.15 | 9.7E-14 | 0.46 | 5’UTR | Y | ||||
3 | 32885733 | C/T | 0.19 | 9.1E-16 | 0.9 | Intergenic | Y | GRMZM2G132936 | 32957454 | 32949608 | RNA recognition motif (RRM)-containing protein |
3 | 219885527 | T/C | -0.11 | 3.1E-12 | 0.28 | Intronic | Y | GRMZM2G074572 | 219900229 | 219884844 | Stomatal cytokinesis defective/SCD1 protein |
3 | 220658469 | A/C | -0.08 | 6.0E-12 | 0.25 | Intronic | Y | GRMZM2G130375 | 220651805 | 220659525 | Beta galactosidase 1 |
4 | 2046350 | CGG/--- | -0.08 | 3.8E-09 | 0.26 | Non-synonymous_coding | Y | GRMZM2G131442 | 2044016 | 2047386 | MYB domain protein 112 |
5 | 164110001 | CNV- | 0.10 | 1.5E-11 | 0.42 | Intergenic | Y | GRMZM2G111872 | 164120892 | 164124546 | Heavy metal-associated domain containing protein |
6 | 7001531 | A/C | -0.08 | 1.1E-15 | 0.4 | Intergenic | Y | GRMZM2G127342 | 7036171 | 7039824 | Lysine histidine transporter 1 (LHT1) |
7 | 7958250 | +/- | -0.08 | 1.9E-08 | 0.3 | Intergenic | Y | GRMZM2G021149 | 7954180 | 7955128 | LSM domain containing protein |
7 | 142997161 | G/A | 0.09 | 7.3E-09 | 0.28 | Intergenic | Y | GRMZM2G091919 | 143003673 | 143001781 | protein kinase superfamily protein |
8 | 22229116 | G/A | 0.13 | 1.3E-08 | 0.35 | Intergenic | N | GRMZM2G325612 | 22249167 | 22245141 | Cytokinin oxidase 5 |
8 | 62217745 | T/A | 0.10 | 6.3E-14 | 0.34 | Intergenic | Y | GRMZM2G130101 | 62267220 | 62273955 | Unknown |
8 | 171334544 | A/G | -0.06 | 1.2E-09 | 0.26 | Intronic | N | GRMZM2G476009 | 171332654 | 171335508 | DNA-directed RNA polymerases subunit RPABC1 |
9 | 16263773 | A/G | 0.17 | 9.9E-09 | 0.33 | Intergenic | Y | GRMZM2G301860 | 16253405 | 16252231 | AP2 domain containing protein |
9 | 16317865 | G/A | 0.10 | 1.4E-15 | 0.59 | Down_stream | Y | GRMZM2G099363 | 16320573 | 16318197 | Caffeoyl-CoA O-methyltransferase |
9 | 106051436 | G/A | 0.08 | 1.7E-05 | 0.45 | Intergenic | Y | GRMZM2G107886 | 106201175 | 106203143 | CCT/B-box zinc finger protein |
9 | 139547728 | C/G | -0.11 | 3.4E-08 | 0.32 | Intergenic | N | GRMZM2G402015 | 139591514 | 139589475 | Plant U-box 13, spotted leaf 11 |
10 | 3090835 | G/A | -0.13 | 6.2E-10 | 0.47 | Intergenic | Y | GRMZM2G068465 | 3066458 | 3062645 | Cytochrome P450 |
10 | 64647379 | G/A | 0.06 | 5.7E-09 | 0.53 | Intergenic | Y | NA | |||
10 | 134501142 | C/T | 0.06 | 4.4E-08 | 0.77 | Intronic | Y | GRMZM2G063972 | 134495450 | 134504022 | Heat shock protein DnaJ |