Comparative genomics of Lactobacillus crispatus suggests novel mechanisms for the competitive exclusion of Gardnerella vaginalis

Table 2 Distribution of Cas-proteins in L. crispatus

OrthoMCL-family	Cas-model	125-2-CHN	214-1	CTV-05	FB049-03	FB077-07	JV-V01	MV-1A-US	MV-3A-US	SJ-3C-US	ST1	Total	Total with models
LACT01579	Csn2	1/1	1/1	1/1	1/1	1/1	1/1	1/1	1/1	1/1	0	9	9
LACT01697	Cas2	0	1/0	1/1	1/1	1/1	1/1	1/1	1/1	1/0	0	8	6
LACT01698	Cas1	0	1/1	1/1	1/1	1/1	1/1	1/1	1/1	1/1	0	7	7
LACT01822	Csn2	0	1/1	1/1	1/1	1/1	1/1	0	1/1	1/1	0	7	7
LACT01823	Cas9/Csn1	0	1/1	0	1/0	1/0	1/1	1/1	1/1	1/0	0	7	4
LACT01825	Cas9/Csn1	0	0	1/0	1/1	1/1	1/0	1/0	1/0	1/1	0	7	3
LACT02396	Cas9/Csn1	0	0	0	1/1	1/1	0	0	0	1/1	0	3	3
LCRIS_01207	cas-CT1978	0	0	0	0	0	0	0	0	0	1/1	1	1
LCRIS_01209	casE-Cse3	0	0	0	0	0	0	0	0	0	1/1	1	1
LCRIS_01210	casD-Cas5e, CRISPR-cas5	0	0	0	0	0	0	0	0	0	1/1	1	1
LCRIS_01211	casC-Cse4	0	0	0	0	0	0	0	0	0	1/1	1	1
LCRIS_01212	casB-cse2	0	0	0	0	0	0	0	0	0	1/1	1	1
LCRIS_01214	Cas3-core, Cas3-HD	0	0	0	0	0	0	0	0	0	1/1	1	1
	Total	1/1	5/4	5/4	7/6	7/6	6/5	5/4	6/5	7/5	6/6	54	45

The first number in the table cells describes the number of CDSs part of the Cas-protein associated ortholog group in a specific strain and the second number indicates the number of group members matching the Cas-model.

ISSN: 1471-2164