Comparative genomics of Lactobacillus crispatus suggests novel mechanisms for the competitive exclusion of Gardnerella vaginalis

Table 3 Distribution of adhesion related proteins in L. crispatus

OrthoMCL- family	Adhesion or colonization domain	125-2-CHN	214-1	CTV-05	FB049-03	FB077-07	JV-V01	MV-1A-US	MV-3A-US	SJ-3C-US	ST1	Total	Total with domain
LACT01267	MucBP	1/1	1/0	1/1	1/1	1/1	1/0	0	1/1	1/1	1/1	9	7
LACT01522	MucBP	1/0	1/0	0	1/0	1/0	1/0	1/0	1/0	1/0	1/1	9	1
LACT01644	MucBP	0	1/1	1/1	1/0	1/0	1/1	1/0	1/1	0	1/1	8	5
LACT01663	MucBP	1/1	1/1	0	1/1	1/1	1/1	1/1	1/1	1/1	0	8	8
LACT01712	MucBP	2/0	0	0	1/1	1/1	1/0	1/0	1/0	1/1	0	7	3
LACT01924	MucBP	1/0	1/1	0	1/1	1/1	1/0	1/0	0	0	0	6	3
LACT02281	MucBP	0	0	0	0	1/1	1/0	1/1	0	0	0	3	2
LACT02327	MucBP	1/0	0	0	0	0	1/1	1/0	0	0	0	3	1
LACT02429	MucBP	2/2	0	0	0	0	0	0	0	0	0	1	1
HMPREF9249_02429	MucBP	0	0	0	0	1/1	0	0	0	0	0	1	1
HMPREF0506_0624	MucBP	0	0	0	0	0	1/1	0	0	0	0	1	1
HMPREF0506_0871	MucBP	0	0	0	0	0	1/1	0	0	0	0	1	1
LCRIS_00919	MucBP	0	0	0	0	0	0	0	0	0	1/1	1	1
LACT00524	Big_3	1/1	1/1	1/1	1/1	1/1	1/1	1/1	1/1	1/1	1/1	10	10
LACT00531	Big_3	1/1	1/1	1/1	1/1	1/1	1/1	1/1	1/1	1/1	1/1	10	10
LACT00945	Big_3	1/0	1/0	1/0	1/1	1/1	1/1	1/1	1/1	1/0	1/1	10	6
LACT02389	Big_3	0	1/1	1/1	0	0	0	0	0	1/1	0	3	3
LACT00169	F5_F8_type_C	1/1	1/1	1/1	1/1	1/1	1/1	1/1	1/0	1/1	1/1	10	9
LACT00800	FbpA, DUF814	1/1	1/1	1/1	1/1	1/1	1/1	1/1	1/1	1/1	1/1	10	10
LACT00237	FIVAR	1/0	1/1	1/1	1/1	1/1	1/1	1/1	1/1	1/1	1/1	10	9
LACT00212	fn3	1/1	1/1	1/1	1/1	1/1	1/1	1/1	1/1	1/1	1/1	10	10
	Total	16/9	13/10	10/9	13/11	15/13	17/12	14/9	12/9	12/10	11/11	131	102

The first number in the table cells describes the number of CDSs part of the ortholog group in a specific strain and the second the number indicates the number of group members having the adhesion or colonization related PFAM-domain(s).

ISSN: 1471-2164