Skip to main content

Advertisement

Table 4 Distribution of predicted bacteriocin related proteins in L. crispatus

From: Comparative genomics of Lactobacillus crispatus suggests novel mechanisms for the competitive exclusion of Gardnerella vaginalis

Bacteriocin class Bacteriocin type PFAM 125-2-CHN 214-1 CTV-05 FB049-03 FB077-07 JV-V01 MV-1A-US MV-3A-US SJ-3C-US ST1 Total Total with domain
Bacteriocins larger than 10kD, Class III Enterolysin A Peptidase_M23 1/1 2/2 2/2 2/2 2/2 2/2 2/2 2/2 2/2 2/2 10 10
Bacteriocin helveticin J - 1 1 1 1 1 1 1 1 1 1 10 -
Helveticin J - 1 1 1 1 2 1 1 1 1 1 10 -
LAPs Small orfs - 1 0 0 1 1 0 1 0 0 0 4 -
Small unmodified bacteriocins, Class II Penocin A Bacteriocin_II 1/2 0 1/2 1/2 1/2 0 0 1/2 1/1 0 6 6
LS2, chain A Bacteriocin_IIc 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 1/1 0 9 9
   Total 7 5 7 8 9 5 6 7 6 4 49 25
  1. For the bacteriocin-like molecules with PFAM-domain, the first number in the table cells describes the number of CDSs part of the ortholog group in a specific strain, and the second number indicates the number of group members having the PFAM-domain. Helveticin J refers to the antimicrobial molecule first identified in L. helveticus and bacteriocin helveticin J to one identified in L. acidophilus.