Table 2 Number of simulated variants and the recoverability of these variants for different values of d
From: Edge effects in calling variants from targeted amplicon sequencing
d | No. of simulated variants | Recovered variants | % of variants recovered | No. of false-negatives |
|---|---|---|---|---|
1 | 5,809 | 3,833 | 65.98 | 1,976 |
2 | 4,722 | 4,371 | 92.57 | 351 |
3 | 4,599 | 4,580 | 99.59 | 19 |
4 | 4,371 | 4,364 | 99.84 | 7 |
5 | 4,164 | 4,162 | 99.95 | 2 |
6 | 4,435 | 4,435 | 100.00 | 0 |
7 | 4,402 | 4,401 | 99.98 | 1 |
8 | 4,272 | 4,272 | 100.00 | 0 |
≥9 | 11,599 | 11,599 | 100.00 | 0 |