Skip to main content

Table 4 Predicted di-, tri- and tetranucleotide simple sequence repeats (microsatellites) in each catshark tissue or combination or tissues

From: Transcriptomic analysis of the lesser spotted catshark (Scyliorhinus canicula) pancreas, liver and brain reveals molecular level conservation of vertebrate pancreas function

 

Transcript

Predicted ORFs

 

Di-

Tri-

Tetra-

Di-

Tri-

Tetra-

Pancreas only

456

23

3

60

6

0

(6.96%)

(0.35%)

(0.05%)

(0.92%)

(0.09%)

(0%)

Brain only

2808

268

7

829

147

1

(13.22%)

(1.26%)

(0.03%)

(3.90%)

(0.69%)

(<0.01%)

Liver only

446

24

3

168

12

1

(13.03%)

(0.70%)

(0.09%)

(4.90%)

(0.35%)

(0.03%)

Pancreas + Brain

481

43

2

72

15

2

(12.50%)

(1.12%)

(0.05%)

(1.87%)

(0.39%)

(0.05%)

Pancreas + Liver

105

5

1

44

3

1

(11.36%)

(0.54%)

(0.11%)

(4.76%)

(0.32%)

(0.11%)

Brain + Liver

702

61

3

106

21

0

(28.28%)

(2.46%)

(0.12%)

(11.47%)

(2.27%)

(0%)

Pancreas + Liver + Brain

1240

158

4

308

108

2

(19.60%)

(2.50)

(0.06%)

(4.87%)

(1.71%)

(0.03%)

  1. Results are shown for both full transcripts and predicted open reading frames (ORFs) and in both cases dinucleotide repeats are the most common.