Identification of a lineage specific zinc responsive genomic island in Mycobacterium avium ssp. paratuberculosis

Table 2 Zur boxes of the MAP zinc regulon as predicted by FIMO analysis

Locus tag	RCN^a	Position^b	Zur box^c
MAP3778		−236	TGATAATGAAAATGATTTTCGTTA
MAP3772c		−30	CGTTAATGAAAATGATTATCATTA
MAP3770		−88	GCTTATTGAAAATGATTTTCGACA
		−33	TCGAGATGAAAATGATTCCCAATA
MAP3769c	rpmG	−283	TCTTGTCGAAAATCATTTTCAATA
		−338	CCTTATTGGGAATCATTTTCATCT
MAP3765		−270	GCTTACTGAAAATGATTGTTATTA
		−139	TGTTAACGAAAATCGTTTTCAGTA
MAP3764c	pks2	−307	GTTTACTGAAAACGATTTTCGTTA
MAP3747c	cobW	−88	GCTTATTGAAAACGATTTTCGACA
		−33	GCTAGATGAAAACGATTGTCGATA
MAP3740	sidA	−118	CGACAATGAAAATCGTTTTCAGTA
MAP3739c	sidG	−21	CCTTACTGAAAACGATTTTCATTG
MAP3737		−197	CCGTAATGAAAATGATTTTCATTA
		−248	GGTTATTGAAAATGACTTTCATTA
MAP3736c	mptA	−65^d	TGTTATCGATAACGATTTTCATTA
		−440^d	CTTTAATGAAAGTCATTTTCAATA
		−491^d	CCGTAATGAAAATCATTTTCATTA
MAP0489c		−66	TTGTAATGGAAACGATTTTCATTA

^aReference Common Name
^bPosition of the first base relative to the annotated translation start site [NCBI:NC_002944].
^cPutative Zur binding sites according to MEME-SUITE and FIMO analysis on the basis of MAP K-10 genome [NCBI:NC_002944].
^dPosition of the first base relative to the transcription start site determined by RACE experiments.

ISSN: 1471-2164