From: Comparative genomics reveals molecular features unique to the songbird lineage
Gene name¥ | Phylogeny | Ensembl ID | Gene location | SD site | Brain-derived ESTs | Non-brain ESTs | Non-brain RNA-SEQ |
---|---|---|---|---|---|---|---|
A4GALT-related* | Â | Â | Â | Â | Â | Â | |
A4GALT-1 | SONGBIRDS†| ENSTGUG00000012139 | chr1A:65,194,903-65,195,964 | YES | No | No | None |
A4GALT-2 | SONGBIRDS†| ENSTGUG00000018227 | chr1A:65,202,780-65,203,835 | YES | No | No | None |
A4GALT-3 | SONGBIRDS†| ENSTGUG00000018451 | chr1A:65,210,658-65,211,719 | YES | No | No | None |
CASC1-related | Â | Â | Â | Â | Â | ||
CASC1-1 | SONGBIRDS†| ENSTGUG00000012133 | chr1A:65,157,078-65,159,677 | FE723736√, DV948439 | JV165872, JV165873 | Embryo, spleen, testes | |
CASC1-2 | SONGBIRDS†| ENSTGUG00000012243 | chr1A:66,373,778-66,384,478 | YES | DV948439 | JV184784, JV165872, JV165873 | Embryo, liver, muscle, testes |
FN3KRP-related | Â | Â | Â | Â | Â | Â | |
FN3KRP | ALL BIRDS‡ | ENSTGUG00000007633 | chr18:6,574624-6,580,544 | DV959265√ | No | Embryo | |
FN3KRPL1 | SONGBIRDS | No model | chrZ:24,858,422-24,862,943 | No | No | Embryo, liver, skin | |
FN3KRPL2 | PASSERINES | ENSTGUG00000006787 | chrZ:69,583,022-69,590,574 | YES | DV955139√, FE727948√, DV955139√ | JV168705√, JV168706√, JR864904√ | Embryo, liver, spleen, testes |
HYDIN-related* | Â | Â | Â | Â | Â | ||
HYDIN | ALL BIRDS‡ | No model | chr11:5,451,491-5,475,997 | No | No | Liver, muscle, skin, spleen | |
HYDINL1 | SONGBIRDS | ENSTGUG00000009150 | chr11:16,377,691-16,404,553 | No | JV172391 | Muscle, skin, spleen | |
HYDINL2 | PASSERINES | No model | chr11:16,633,304-16,663,944 | YES | No | No | Liver, muscle, testes |
HYDINL3 | ZEBRA FINCH | ENSTGUG00000009256 | chr11:17,005,696-17,033,616 | YES | No | No | Muscle, testes |
HYDINL4 | ZEBRA FINCH | No model | chr11:18,229,584-18,238,051 | YES | No | No | None |
HYDINL5 | ZEBRA FINCH | ENSTGUG00000009737 | chr11:19,907,326-19,914,490 | No | JV172391 | Testes | |
NOVEL (TMRA) | Â | Â | Â | Â | Â | Â | |
TMRA | SONGBIRDS | ENSTGUG00000012248 | chr1A:66,486,182-66,494,397 | YES | CK302958√ | JV159445√, JV159451√ | Embryo, liver, muscle, spleen, testes |
RIOK2-related | Â | Â | Â | Â | Â | ||
RIOK2 | ALL BIRDS‡ | ENSTGUG00000001223 | chrZ:24,872,816-24,883,105 | DV956882√ | JV172474√, JR863880√ | Embryo, liver, muscle, skin, spleen, testes | |
RIOK2L | SONGBIRDS | No model | chrZ:69,578,247-69,578,886 | YES | No | No | Skin |
RNF4-related* | Â | Â | Â | Â | Â | ||
RNF4 | ALL BIRDS‡ | ENSTGUG00000010518 | chr4:62,477,216-62,484,738 | DV951366√ | JV183872√, JR867734√ | Liver, skin, testes | |
RNF4L1 | SONGBIRDS | No model | chr4:8,201,210-8,201,765 | No | No | None | |
RNF4L2 | PASSERINES | ENSTGUG00000018516 | chr4:20,660,938-20,751,958 | No | No | None | |
RNF4L3 | PASSERINES | ENSTGUG00000018370 | chr4:22,411,072-22,433,579 | No | No | Embryo, muscle, skin, spleen | |
RNF4L4 | ZEBRA FINCH | ENSTGUG00000018547 | chr4:22,445,102-22,478,943 | No | No | Testes | |
RNF4L5 | ZEBRA FINCH | ENSTGUG00000018338 | chr4:22,507,187-22,517,977 | No | No | Muscle, spleen | |
RNF4L6 | ZEBRA FINCH | ENSTGUG00000018226 | chr4:22,538,729-22,547,838 | No | No | None | |
RNF4L7 | PASSERINES | No model | chr4:41,650,214-41,650,348 | No | No | None | |
URB1-related | Â | Â | Â | Â | Â | ||
URB1 | ALL BIRDS‡ | ENSTGUG00000013442/ no model | chr1:97,555,543-97,592,096/ chr1_random:362,665-365,267 | YES | FE722167√ | No | Embryo, liver, muscle, skin, testes |
URB1L1 | ZEBRA FINCH | ENSTGUG00000011753 | chr1A:60,924,812-60,941,816 | YES | CK301434, CK303889, DV957700 | No | Embryo, liver |
URB1L2 | ZEBRA FINCH | No model | chr1A:63,520,638-63,528,208 | CK301434, CK303889 | No | None | |
URB1L3 | SONGBIRDS | No model | chr5:4,764,796-4,772,823 | YES | CK301434, CK303889, DV957700 | No | Skin |
URB1L4 | ZEBRA FINCH | No model | chr7:1,064,071-1,065,024 | No | No | None | |
URB1L5 | ZEBRA FINCH | No model | chr23:2,319,460-2,335,606 | YES | DV957700 | No | Liver, muscle, spleen, testes |
YTHDC2-related* | Â | Â | Â | Â | Â | Â | |
YTHDC2 | ALL BIRDS‡ | No model | chrZ:21,509,497-21,511,474 | YES | No | No | None |
YTHDC2L1 | SONGBIRDS | ENSTGUG00000014232 | chr2_random:378,730-383,125 | CK309358√ | No | None | |
YTHDC2L2 | ZEBRA FINCH | ENSTGUG00000014992 | chr3_random:766,156-785,803 | No | No | None | |
YTHDC2L3 | PASSERINES | ENSTGUG00000000643 | chrZ:10,792,293-10,809,782 | YES | No | JV174477, JV177272 | Embyro, liver, muscle, spleen |
YTHDC2L4 | ZEBRA FINCH | No model | chrZ:29,309,810-29,332,222 | No | No | Embryo, liver, muscle, skin, spleen, testes | |
YTHDC2L5 | ZEBRA FINCH | ENSTGUG00000003755 | chrZ:55,988,800-56,020,229 | DV947064√ | JV174477√ | Embryo, liver, muscle, skin, spleen, testes | |
YTHDC2L6 | ZEBRA FINCH | ENSTGUG00000004173 | chrZ:57,443,052-57,444,728 | YES | No | No | Embryo |