Table 3 Number of reads before and after FastQC filtering, and number of mapped and non-mapped reads
From: RNA-seq analysis of broiler liver transcriptome reveals novel responses to high ambient temperature
cDNA library | Reads (Pre-filter) | Reads (Post-filter) | Mapped reads | Non-mapped reads |
|---|---|---|---|---|
2145 | 14,518,971 | 14,102,129 | 10,786,983 | 3,315,146 |
2146 | 16,435,957 | 16,079,777 | 11,966,390 | 4,113,387 |
2153 | 16,143,847 | 15,893,619 | 10,958,652 | 4,934,967 |
2154 | 12,443,771 | 12,157,917 | 9,162,608 | 2,995,309 |
2162 | 13,121,981 | 12,695,265 | 8,949,977 | 3,745,288 |
2163 | 19,905,505 | 19,516,053 | 14,835,601 | 4,680,452 |
2169 | 22,161,153 | 21,786,920 | 15,456,927 | 6,329,993 |
2170 | 15,633,924 | 15,633,924 | 11,468,175 | 4,165,749 |
Total | 130,365,109 | 127,865,604 | 93,585,313 | 34,280,291 |
Standard error | ±816.15 | ±820.30 | ±245.41 | ±179.13 |