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Figure 3 | BMC Genomics

Figure 3

From: Whole-Transcriptome profiling of formalin-fixed, paraffin-embedded renal cell carcinoma by RNA-seq

Figure 3

Correlation of RNA-seq for FF and FFPE tumors. A) FFPE vs. FF, tumor 1, all RNA-seq genes B) FFPE vs. FF, tumor 2, all RNA-seq genes C) FFPE vs. FF, tumor 1, RCC genes D) FFPE vs. FF, tumor 2, RCC genes E) For qPCR, r (Pearson’s correlation coefficient) was calculated using ΔCT. For RNA-seq, r was calculated using the log2 FPKM for genes with FPKM > = 0.01. FF, fresh frozen; FFPE, formalin-fixed paraffin-embedded; FPKM, fragments per kilobase of exon per million fragments mapped.

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