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Table 1 Categories provided with categorizer

From: Categorizer: a tool to categorize genes into user-defined biological groups based on semantic similarity

Groups

Categories

Biological processes

Cell cycle, Cytoskeleton, Metabolism, Transcription, Translation, Protein folding, Proteolysis, Signaling, RNA processing, Splicing, Transmembrane transport, Intracellular localization, Protein transport, Nuclear transport, Vesicles, Golgi/ER, Mitochondria, Endo- and exo-cytosis, Lysosome, Peroxisome, Ribosomes, Phagocytosis/phagosome, Autophagy, Apoptosis, DNA repair, DNA replication, Receptors

Cellular localization

Cytoplasm, Mitochondria, Golgi, Nucleus, Cytoskeleton, Vesicle/Lysosome, ER, Extracellular

Enzyme functions

Hydrolase, Isomerase, Ligase, Lyase, Oxidoreductase, Transferase