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Table 1 Summary of the sequencing and mapping statistics

From: Extensive duplication of the Wolbachia DNA in chromosome four of Drosophila ananassae

Line

Strategy

Combined read length

Reads sequenced

Drosophila reads mapped

w Ri reads mapped

Ratio of wRi reads to Drosophilareads

Hawaii

MP

80

33,602,456

26,875,741 (80.0%)

605,174 (1.8%)

2.3%

Hawaii

PE

129

55,650,278

47,522,893 (85.4%)

471,055 (0.85%)

0.99%

IndiaxFlorida

MP

108

108,816,304

16,398,509 (15.1%)*

258,215 (0.09%)

0.57%

IndiaxFlorida

MP

72

62,988,324

40,744,911 (64.6%)

183,582 (0.29%

0.45%

IndiaxFlorida

PE

202

165,515,736

150,307,807 (90.8%)

702,594 (0.42%)

0.46%

India

MP

80

64,363,460

40,552,454 (63.0%)

67,983 (0.11%)

0.17%

India

PE

202

90,067,451

83,518,157 (92.7%)

88,597 (0.098%)

0.11%

Indonesia

MP

70

72,675,508

40,576,655 (55.8%)

185,889 (0.26%)

0.46%

Indonesia

PE

150

64,503,996

51,912,428 (80.5%)

258,215 (0.40%)

0.40%

  1. The sequencing statistics for line and sequence sequence strategy are provided, including the combined read length, number of reads sequenced, number of non-duplicate reads mapping to the D. ananassae caf1 assembly, number of non-duplicate reads mapping to the wRi genome, and the ratio of the reads mapping to the wRi and D. ananassae genomes.
  2. *This library had a significant number of duplicate mate pairs such that >84% of reads mapped, but >80% of mapped reads were duplicates.