Skip to main content

Table 1 Summary of the sequencing and mapping statistics

From: Extensive duplication of the Wolbachia DNA in chromosome four of Drosophila ananassae

Line Strategy Combined read length Reads sequenced Drosophila reads mapped w Ri reads mapped Ratio of wRi reads to Drosophilareads
Hawaii MP 80 33,602,456 26,875,741 (80.0%) 605,174 (1.8%) 2.3%
Hawaii PE 129 55,650,278 47,522,893 (85.4%) 471,055 (0.85%) 0.99%
IndiaxFlorida MP 108 108,816,304 16,398,509 (15.1%)* 258,215 (0.09%) 0.57%
IndiaxFlorida MP 72 62,988,324 40,744,911 (64.6%) 183,582 (0.29% 0.45%
IndiaxFlorida PE 202 165,515,736 150,307,807 (90.8%) 702,594 (0.42%) 0.46%
India MP 80 64,363,460 40,552,454 (63.0%) 67,983 (0.11%) 0.17%
India PE 202 90,067,451 83,518,157 (92.7%) 88,597 (0.098%) 0.11%
Indonesia MP 70 72,675,508 40,576,655 (55.8%) 185,889 (0.26%) 0.46%
Indonesia PE 150 64,503,996 51,912,428 (80.5%) 258,215 (0.40%) 0.40%
  1. The sequencing statistics for line and sequence sequence strategy are provided, including the combined read length, number of reads sequenced, number of non-duplicate reads mapping to the D. ananassae caf1 assembly, number of non-duplicate reads mapping to the wRi genome, and the ratio of the reads mapping to the wRi and D. ananassae genomes.
  2. *This library had a significant number of duplicate mate pairs such that >84% of reads mapped, but >80% of mapped reads were duplicates.