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Table 1 Sequenced BAC clones from the Sh4 region

From: Genomic, regulatory and epigenetic mechanisms underlying duplicated gene evolution in the natural allotetraploid Oryza minuta

Species

Genome type

BAC clones

BAC length (bp)

Gaps

Total sequence length (bp)*

O. punctata

BB

OP_Ba0062J15

161,916

2

367,482

O. punctata

BB

OP_Ba0087M09

208,343

3

-

O. officinalis

CC

OO_Ba0051G09

162,998

Finished

415,068

O. officinalis

CC

OO_Ba0021I20

256,074

3

-

O. minuta (BB)

BBCC_BB

OM_Ba0107C17

107,440

Finished

403,493

O. minuta (BB)

BBCC_BB

OM_Ba0002F21

137,910

3

-

O. minuta (BB)

BBCC_BB

OM_Ba0232O12

184,883

1

-

O. minuta (CC)

BBCC_CC

OM_Ba0113I02

102,513

Finished

353,205

O. minuta (CC)

BBCC_CC

OM_Ba0142K17

135,139

4

-

O. minuta (CC)

BBCC_CC

OM_Ba0186E24

123,691

1

-

  1. *Total length of each genome after removing overlapping sequences.