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Table 2 Gene ontology analysis of Epinephelus coioides larvae

From: Transcriptome analysis of the effect of Vibrio alginolyticus infection on the innate immunity-related complement pathway in Epinephelus coioides

Cellular component    
Gene Ontology term Cluster frequency Genome frequency of use Corrected P-value
Myosin complex 45 out of 1129 genes, 4.0% 162 out of 28794 genes, 0.6% 1.46E-23
Actin cytoskeleton 79 out of 1129 genes, 7.0% 656 out of 28794 genes, 2.3% 1.62E-16
Contractile fiber 59 out of 1129 genes, 5.2% 501 out of 28794 genes, 1.7% 1.28E-11
Extracellular region 106 out of 1129 genes, 9.4% 1483 out of 28794 genes, 5.2% 3.55E-07
Myofibril 43 out of 1129 genes, 3.8% 433 out of 28794 genes, 1.5% 6.02E-06
Sarcomere 36 out of 1129 genes, 3.2% 327 out of 28794 genes, 1.1% 6.05E-06
Contractile fiber part 36 out of 1129 genes, 3.2% 332 out of 28794 genes, 1.2% 8.94E-06
Cytoskeleton 173 out of 1129 genes, 15.3% 3012 out of 28794 genes, 10.5% 3.39E-05
Extracellular region part 92 out of 1129 genes, 8.1% 1346 out of 28794 genes, 4.7% 3.53E-05
Striated muscle thin filament 9 out of 1129 genes, 0.8% 25 out of 28794 genes, 0.1% 5.28E-05
Molecular function    
Hydrolase activity 283 out of 1138 genes, 24.9% 5158 out of 28380 genes, 18.2% 2.08E-06
Cytoskeletal protein binding 101 out of 1138 genes, 8.9% 1398 out of 28380 genes, 4.9% 2.80E-06
Hydrolase activity, acting on acid anhydrides 132 out of 1138 genes, 11.6% 2114 out of 28380 genes, 7.4% 8.62E-05
Pyrophosphatase activity 131 out of 1138 genes, 11.5% 2097 out of 28380 genes, 7.4% 9.39E-05
Biological process    
Lucose metabolic process 42 out of 1105 genes, 3.8% 279 out of 27537 genes, 1.0% 2.39E-10
Hexose metabolic process 48 out of 1105 genes, 4.3% 443 out of 27537 genes, 1.6% 7.72E-07
Muscle system process 52 out of 1105 genes, 4.7% 520 out of 27537 genes, 1.9% 2.54E-06
Small molecule metabolic process 215 out of 1105 genes, 19.5% 3657 out of 27537 genes, 13.3% 4.39E-06
Protein activation cascade 11 out of 1105 genes, 1.0% 31 out of 27537 genes, 0.1% 2.49E-05
Monosaccharide metabolic process 48 out of 1105 genes, 4.3% 493 out of 27537 genes, 1.8% 2.50E-05
Muscle contraction 37 out of 1105 genes, 3.3% 328 out of 27537 genes, 1.2% 2.55E-05
Complement activation 9 out of 1105 genes, 0.8% 20 out of 27537 genes, 0.1% 4.39E-05
Alcohol metabolic process 69 out of 1105 genes, 6.2% 854 out of 27537 genes, 3.1% 4.72E-05