Table 1 Quality assessment statistics of de novo assemblies of high throughput sequencing studies
Organisms (Genome Size Mb) | Correctness metric | #Mis-assembled (%) | Reference | |
|---|---|---|---|---|
| Â | ABySS | Velvet | Â | |
E. coli (4.6) | Less than 5 consecutive unaligned bases. >95% identity | 10 (8) | 9 (3) | [29] |
S. aureus (2.8) | Â | 6 (0.6) | 5 (0.5) | Â |
H. acininychis (1.5) | Â | 8 (2.8) | 2 (0.7) | Â |
S. aureus (2.9) | Translocation, relocation and inversion | 1 (0.4) | 17 (37) | [28] |
R. sphaeroides (4.6) | Â | 3 (2) | 6 (3) | Â |
H. sapiens (ch. 14) (88.3) | Â | 9 (0) | 9156 (250)1 | Â |