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Table 2 Assembly Statistics of de novo assemblers in O. tauri

From: An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies

Assemby (kmer size)

Nb of scaffold

N50

Size (Mb)

Nb of Aligned Scaffolds

Aligned Bases (Mb)

Ref. cov.1

CDS cov.2

Start to Stop CDS3

Velvet (41)

2080

  9539

12.3

2066

11.68

94

96

42

ABySS (31)

1490

14550

12.8

1474

11.87

95

98

43

CLCbio (28)

1402

14519

12.6

1394

11.96

96

98

42

  1. 1,2: percentage of aligned bases against the reference genome sequence and against the CDS sequences. 3: percentage of complete CDS within a single scaffold.
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BMC Genomics

ISSN: 1471-2164

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