Table 2 Conserved Vv-miRNAs identified and normalized counts (NC) in control and GA 3 treated grapevine berries
From: Grapevine microRNAs responsive to exogenous gibberellin
Control | GA3treatment | Identity | ||||
|---|---|---|---|---|---|---|
miRNA ID | Sequences | NC | miRNA ID | Sequences | NC | |
Vvi-miR156a | TTGACAGAAGAGAGGGAGCAC | 8.81 | vv-miR156a | TTGACAGAAGAGAGGGAGCAC | 513.79 | ↑ |
Vvi-miR156b | AACTGACAGAAGAGAGTGAGCAC | 2308.90 | vv-miR156b | AACTGACAGAAGAGAGTGAGCAC | 0.61 | ↓ |
Vvi-miR156c | TGACAGAAGAGAGTGAGCACAC | 2214.31 | vv-miR156c | TGACAGAAGAGAGTGAGCACAC | 0.17 | ↓ |
Vvi-miR156d | TGACAGAAGAGAGTGAGCAC | 2321.38 | vv-miR156d | TGACAGAAGAGAGTGAGCAC | 2331.59 | ● |
Vvi-miR156e | TGACAGAGGAGAGTGAGCAC | 3.40 | vv-miR156e | TGACAGAGGAGAGTGAGCAC | 14.83 | ↑ |
Vvi-miR156f | CTGTTGACAGAAGATAGAGAGCAC | 5215.88 | vv-miR156f | CTGTTGACAGAAGATAGAGAGCAC | 3.93 | ↓ |
Vvi-miR156g | GCTCTCTAGACTTCTGTCATC | 5214.31 | vv-miR156g | GCTCTCTAGACTTCTGTCATC | 0.61 | ↓ |
Vvi-miR156i | TTGACAGAAGATAGAGAGCAC | 5214.31 | vv-miR156i | TTGACAGAAGATAGAGAGCAC | 6093.28 | ↑ |
0.00 | vv-miR159b | CCTTGGAGTGAAGGGAGCT | 0.17 | ▲ | ||
Vvi-miR159c | TTTGGATTGAAGGGAGCTCTA | 74.61 | vv-miR159c | TTTGGATTGAAGGGAGCTCTA | 582.11 | ↑ |
Vvi-miR160a | TCCTAGTTGGCATCAGAGGAG | 1.66 | vv-miR160a | TCCTAGTTGGCATCAGAGGAG | 0.09 | ↓ |
Vvi-miR160b | GCATGAGGGGAGTCAAGCAGG | 1.66 | vv-miR160b | GCATGAGGGGAGTCAAGCAGG | 4.19 | ↑ |
Vvi-miR160c | GCGTGCGAGGAGCCAAGCATA | 3.75 | vv-miR160c | GCGTGCGAGGAGCCAAGCATA | 4.54 | ● |
Vvi-miR160d | TGCCTGGCTCCCTGTATGCCA | 4.71 | 0.00 | ▼ | ||
Vvi-miR160e | GCGTATGAGGAGCCATGCATA | 4.71 | vv-miR160e | GCGTATGAGGAGCCATGCATA | 2.27 | ↓ |
0.00 | vv-miR160f | TGCCTGGCTCCCTGTATGCCA | 43.98 | ▲ | ||
Vvi-miR162 | TCGATAAACCTCTGCATCCAG | 236.04 | vv-miR162 | TCGATAAACCTCTGCATCCAG | 231.76 | ● |
Vvi-miR164a | TTGGAGAAGCAGGGCACGTGC | 43.02 | vv-miR164a | TTGGAGAAGCAGGGCACGTGC | 0.17 | ↓ |
Vvi-miR164c | TGGAGAAGCAGGGCACGTGCAT | 43.19 | vv-miR164c | TGGAGAAGCAGGGCACGTGCAT | 6.72 | ↓ |
Vvi-miR164d | TGGAGAAGCAGGGCACGTGCA | 43.02 | vv-miR164d | TGGAGAAGCAGGGCACGTGCA | 798.08 | ↑ |
Vvi-miR166a | TCTCGGACCAGGCTTCATTCCT | 762.04 | vv-miR166a | TCTCGGACCAGGCTTCATTCCT | 7.85 | ↓ |
Vvi-miR166b | TCGGACCAGGCTTCATTCCTC | 3280.28 | vv-miR166b | TCGGACCAGGCTTCATTCCTC | 15371.38 | ↑ |
Vvi-miR166c | TCGGACCAGGCTTCATTCCCC | 21467.36 | 0.00 | ▼ | ||
Vvi-miR166d | GATTGTTGTCTGGCTCGAGGC | 21492.15 | vv-miR166d | GATTGTTGTCTGGCTCGAGGC | 1.05 | ↓ |
Vvi-miR166e | GGAATGTTGTCTGGCTCGAGG | 21467.36 | vv-miR166e | GGAATGTTGTCTGGCTCGAGG | 311.87 | ↓ |
Vvi-miR166f | GGAATGTTGGCTGGCTCGAGG | 21506.81 | vv-miR166f | GGAATGTTGGCTGGCTCGAGG | 18.24 | ↓ |
Vvi-miR166g | TTCGGACCAGGCTTCATTCCC | 21509.60 | vv-miR166g | TTCGGACCAGGCTTCATTCCC | 82.11 | ↓ |
Vvi-miR166h | TCGGACCAGGCTTCATTCCCC | 22171.73 | vv-miR166h | TCGGACCAGGCTTCATTCCCC | 22520.68 | ● |
Vvi-miR167a | TGAAGCTGCCAGCATGATCTGG | 32.81 | vv-miR167a | TGAAGCTGCCAGCATGATCTGG | 11.78 | ↓ |
Vvi-miR167b | TGAAGCTGCCAGCATGATCTAAG | 616.06 | vv-miR167b | TGAAGCTGCCAGCATGATCTAAG | 38.48 | ↓ |
Vvi-miR167c | TGAAGCTGCCAGCATGATCTC | 134.12 | vv-miR167c | TGAAGCTGCCAGCATGATCTC | 1901.57 | ↑ |
Vvi-miR167d | TGAAGCTGCCAGCATGATCTAG | 424.87 | vv-miR167d | TGAAGCTGCCAGCATGATCTAG | 1.75 | ↓ |
Vvi-miR167e | TGAAGCTGCCAGCATGATCTA | 613.09 | vv-miR167e | TGAAGCTGCCAGCATGATCTA | 2349.30 | ↑ |
Vvi-miR168 | TCGCTTGGTGCAGGTCGGGAA | 2963.35 | vv-miR168 | TCGCTTGGTGCAGGTCGGGAA | 2654.62 | ● |
Vvi-miR169a | CAGCCAAGGATGACTTGCCGG | 13.09 | 0.00 | ▼ | ||
Vvi-miR169b | GGTCGAATTGAGCCAAGGATGG | 5.58 | vv-miR169b | GGTCGAATTGAGCCAAGGATGG | 0.35 | ↓ |
Vvi-miR169c | TCCGGCAAGTTGTCCTTGGCTAC | 13.09 | vv-miR169c | TCCGGCAAGTTGTCCTTGGCTAC | 0.70 | ↓ |
Vvi-miR169d | CAGCCAAGAATGATTTGCCGG | 35.25 | vv-miR169d | CAGCCAAGAATGATTTGCCGG | 105.50 | ↑ |
Vvi-miR169e | TAGCCAAGGATGACTTGCCT | 0.44 | 0.00 | ▼ | ||
Vvi-miR169f | TGGGCAAGTTGTGTTTGGCTAC | 0.35 | vv-miR169f | TGGGCAAGTTGTGTTTGGCTAC | 0.26 | ● |
Vvi-miR169g | CAGCCAAGGATGACTTGCCGA | 0.44 | vv-miR169g | CAGCCAAGGATGACTTGCCGA | 6.54 | ↑ |
Vvi-miR169h | TGAGCCAAGGATGGCTTGCCGT | 5.50 | vv-miR169h | TGAGCCAAGGATGGCTTGCCGT | 7.42 | ● |
Vvi-miR169i | CTGGTCATGCACGGCTGGTTA | 1.83 | vv-miR169i | CTGGTCATGCACGGCTGGTTA | 0.09 | ↓ |
Vvi-miR169j | CAGCCAAGGATGACTTGCCGG | 13.09 | 0.00 | ▼ | ||
Vvi-miR169k | AGCCAAGGATGACTTGCCGGA | 13.09 | vv-miR169k | AGCCAAGGATGACTTGCCGGA | 0.26 | ↓ |
Vvi-miR169l | TGAGCCAAGGATGACTTGCCGT | 58.12 | vv-miR169l | TGAGCCAAGGATGACTTGCCGT | 0.96 | ↓ |
Vvi-miR169m | TGAGCCAAGGATGACTTGCCG | 54.45 | 0.00 | ▼ | ||
Vvi-miR169n | AAGCATCTGAGGCTCTATTTC | 16.32 | vv-miR169n | AAGCATCTGAGGCTCTATTTC | 186.82 | ↑ |
Vvi-miR169o | TGAGCCAAGGATGACTTGCCG | 54.80 | vv-miR169o | TGAGCCAAGGATGACTTGCCG | 13.53 | ↓ |
Vvi-miR169p | GCAAGCATCCGAGGCTCTGT | 55.50 | vv-miR169p | GCAAGCATCCGAGGCTCTGT | 3.66 | ↓ |
Vvi-miR169q | TAGAGCCAAGGATGACTTGCCG | 16.40 | vv-miR169q | TAGAGCCAAGGATGACTTGCCG | 6.37 | ↓ |
Vvi-miR169r | TGAGTCAAGGATGACTTGCCGA | 4.71 | vv-miR169r | TGAGTCAAGGATGACTTGCCGA | 0.79 | ↓ |
Vvi-miR169s | CAGCCAAGGATGACTTGCCGG | 13.18 | 0.00 | ▼ | ||
Vvi-miR169t | GGCAAGTTGACTTGACTCAGT | 1.66 | vv-miR169t | GGCAAGTTGACTTGACTCAGT | 6.81 | ↑ |
Vvi-miR169u | GGCAAGTTGACTTGACTCTGT | 2.71 | vv-miR169u | GGCAAGTTGACTTGACTCTGT | 4.01 | ● |
Vvi-miR169v | AAGCCAAGGATGAATTGCCGG | 4.36 | vv-miR169v | AAGCCAAGGATGAATTGCCGG | 2.62 | ↓ |
Vvi-miR169w | CAGCCAAGGATGACTTGCCGG | 13.18 | vv-miR169w | CAGCCAAGGATGACTTGCCGG | 12.39 | ● |
Vvi-miR169x | TGAGTCAAGGATGACTTGCCGA | 0.52 | vv-miR169x | TGAGTCAAGGATGACTTGCCGA | 0.70 | ● |
Vvi-miR171a | TGTTGGGACGGCTCAATCAAA | 4.71 | vv-miR171a | TGTTGGGACGGCTCAATCAAA | 5.67 | ● |
Vvi-miR171b | TTGAGCCGCGTCAATATCTCC | 4.36 | vv-miR171b | TTGAGCCGCGTCAATATCTCC | 35.69 | ↑ |
Vvi-miR171c | GGATATTGGTGCGGTTCAATA | 5.15 | vv-miR171c | GGATATTGGTGCGGTTCAATA | 4.54 | ● |
Vvi-miR171d | TTGATTGAGCCGTGCCAATAT | 5.15 | vv-miR171d | TTGATTGAGCCGTGCCAATAT | 2.53 | ↓ |
0.00 | vv-miR171e | TGATTGAGCCGCGCCAATATC | 0.09 | ▲ | ||
0.00 | vv-miR171f | TTGAGCCGCGCCAATATCACT | 2.01 | ▲ | ||
0.00 | vv-miR171h | TTGAGCCGCGCCAATATCCCG | 0.96 | ▲ | ||
Vvi-miR171i | TGATTGAGCCGTGCCAATATC | 4.71 | vv-miR171i | TGATTGAGCCGTGCCAATATC | 85.43 | ↑ |
Vvi-miR172c | GGAGCATCATCAAGATTCACA | 0.09 | vv-miR172c | GGAGCATCATCAAGATTCACA | 103.40 | ↑ |
Vvi-miR172d | AGAATCTTGATGATGCTGCAT | 184.47 | vv-miR172d | AGAATCTTGATGATGCTGCAT | 117.63 | ↓ |
Vvi-miR319b | TTGGACTGAAGGGAGCTCCC | 0.35 | 0.00 | ▼ | ||
Vvi-miR319c | ATTGAATGATGCGGGAGACAA | 0.35 | vv-miR319c | ATTGAATGATGCGGGAGACAA | 20.68 | ↑ |
Vvi-miR319e | TTTGGACTGAAGGGAGCTCCT | 18.59 | vv-miR319e | TTTGGACTGAAGGGAGCTCCT | 7.94 | ↓ |
Vvi-miR319f | TGCTTGGACTGAAGGGAGC | 0.35 | vv-miR319f | TGCTTGGACTGAAGGGAGC | 3.40 | ↑ |
Vvi-miR319g | TTGGACTGAAGGGAGCTCCC | 0.26 | vv-miR319g | TTGGACTGAAGGGAGCTCCC | 1.40 | ↑ |
Vvi-miR390 | AAGCTCAGGAGGGATAGCGCC | 1.75 | vv-miR390 | AAGCTCAGGAGGGATAGCGCC | 160.73 | ↑ |
0.00 | vv-miR393a | ATCATGCTATCCCTTAGGAAC | 1.66 | ▲ | ||
0.00 | vv-miR393b | GGAGGAGGCATCCAAAGGGAT | 0.79 | ▲ | ||
Vvi-miR394a | TTGGCATTCTGTCCACCTCC | 2.71 | 0.00 | ▼ | ||
Vvi-miR394b | TATTGGCATTCTGTCCACCTCC | 2.53 | vv-miR394b | TATTGGCATTCTGTCCACCTCC | 0.09 | ↓ |
Vvi-miR394c | TTGGCATTCTGTCCACCTCC | 2.71 | vv-miR394c | TTGGCATTCTGTCCACCTCC | 0.79 | ↓ |
Vvi-miR395a | CTGAAGTGTTTGGGGGAACTC | 22.08 | 0.00 | ▼ | ||
Vvi-miR395b | CTGAAGTGTTTGGGGGAACTC | 22.08 | 0.00 | ▼ | ||
Vvi-miR395c | CTGAAGTGTTTGGGGGAACTC | 22.08 | 0.00 | ▼ | ||
Vvi-miR395d | CTGAAGTGTTTGGGGGAACTC | 22.08 | 0.00 | ▼ | ||
Vvi-miR395e | CTGAAGTGTTTGGGGGAACTC | 22.08 | 0.00 | ▼ | ||
Vvi-miR395f | CACTGAAGTGTTTGGGGGAAC | 22.08 | vv-miR395f | CACTGAAGTGTTTGGGGGAAC | 0.09 | ↓ |
Vvi-miR395g | GTTCCCCTGAGCACTTCATTG | 22.16 | vv-miR395g | GTTCCCCTGAGCACTTCATTG | 0.52 | ↓ |
Vvi-miR395h | CTGAAGTGTTTGGGGGAACTC | 22.08 | 0.00 | ▼ | ||
Vvi-miR395i | CTGAAGTGTTTGGGGGAACTC | 22.08 | 0.00 | ▼ | ||
Vvi-miR395j | CTGAAGTGTTTGGGGGAACTC | 22.08 | 0.00 | ▼ | ||
Vvi-miR395k | GTTCCCTTGACCACTTCACTG | 22.08 | vv-miR395k | GTTCCCTTGACCACTTCACTG | 0.44 | ↓ |
Vvi-miR395l | CCCCTAGAGTTCCCCTGACCA | 22.08 | vv-miR395l | CCCCTAGAGTTCCCCTGACCA | 0.09 | ↓ |
Vvi-miR395m | CTGAAGTGTTTGGGGGAACTC | 22.08 | vv-miR395m | CTGAAGTGTTTGGGGGAACTC | 11.61 | ↓ |
Vvi-miR396a | CTCAAGAAAGCTGTGGGAGG | 25.04 | vv-miR396a | CTCAAGAAAGCTGTGGGAGG | 35.17 | ↑ |
Vvi-miR396b | TTCCACAGCTTTCTTGAACTT | 53.23 | vv-miR396b | TTCCACAGCTTTCTTGAACTT | 35.86 | ↓ |
Vvi-miR396c | TTCCACAGCTTTCTTGAACTG | 13.53 | vv-miR396c | TTCCACAGCTTTCTTGAACTG | 18.41 | ↑ |
Vvi-miR396d | GTTCAATAAAGCTGTGGGAAG | 14.22 | vv-miR396d | GTTCAATAAAGCTGTGGGAAG | 6.20 | ↓ |
Vvi-miR397a | TCATTGAGTGCAGCGTTGATG | 7.59 | vv-miR397a | TCATTGAGTGCAGCGTTGATG | 29.41 | ↑ |
Vvi-miR398a | CAAGGGAGTGGCACCTGAGAACA | 0.09 | vv-miR398a | CAAGGGAGTGGCACCTGAGAACA | 6.98 | ↑ |
Vvi-miR398b | GGTGTGACCTGAGAATCACATG | 0.61 | vv-miR398b | GGTGTGACCTGAGAATCACATG | 0.26 | ↓ |
Vvi-miR398c | TGTGTTCTCAGGTCGCCCCTG | 0.61 | vv-miR398c | TGTGTTCTCAGGTCGCCCCTG | 1.13 | ↑ |
Vvi-miR399a | GTGTGATTCTCCTTTGGCAGA | 0.70 | vv-miR399a | GTGTGATTCTCCTTTGGCAGA | 1.57 | ↑ |
Vvi-miR399b | TGCCAAAGGAGAGTTGCCCTG | 0.26 | 0.00 | ▼ | ||
Vvi-miR399c | TGCCAAAGGAGAGTTGCCCTG | 0.26 | vv-miR399c | TGCCAAAGGAGAGTTGCCCTG | 0.09 | ↓ |
Vvi-miR399d | TCTGCCAAAGGAGATTTGCTC | 1.48 | vv-miR399d | TCTGCCAAAGGAGATTTGCTC | 0.26 | ↓ |
Vvi-miR399e | TGCCAAAGGAGATTTGCCCGG | 3.58 | vv-miR399e | TGCCAAAGGAGATTTGCCCGG | 10.56 | ↑ |
Vvi-miR399g | TGCCAAAGGAGATTTGCCCCT | 9.08 | vv-miR399g | TGCCAAAGGAGATTTGCCCCT | 1.31 | ↓ |
Vvi-miR399h | TGCCAAAGGAGAATTGCCCTG | 0.52 | vv-miR399h | TGCCAAAGGAGAATTGCCCTG | 0.96 | ↑ |
Vvi-miR399i | CGCCAAAGGAGAGTTGCCCTG | 29.49 | vv-miR399i | CGCCAAAGGAGAGTTGCCCTG | 14.05 | ↓ |
Vvi-miR403a | TTAGATTCACGCACAAACTCG | 52.27 | 0.00 | ▼ | ||
Vvi-miR403b | TTAGATTCACGCACAAACTCG | 52.62 | 0.00 | ▼ | ||
Vvi-miR403c | CGCACAAACTCGTGATCTGTC | 52.27 | vv-miR403c | CGCACAAACTCGTGATCTGTC | 0.09 | ↓ |
Vvi-miR403d | AGTTTGTGCGCGAATCCAACC | 52.62 | vv-miR403d | AGTTTGTGCGCGAATCCAACC | 4.36 | ↓ |
Vvi-miR403e | TTAGATTCACGCACAAACTCGC | 52.18 | vv-miR403e | TTAGATTCACGCACAAACTCGC | 0.17 | ↓ |
Vvi-miR403f | TTAGATTCACGCACAAACTCG | 52.36 | vv-miR403f | TTAGATTCACGCACAAACTCG | 586.04 | ↑ |
Vvi-miR408 | ACGGGGACGAGGTAGTGCATG | 22.34 | vv-miR408 | ACGGGGACGAGGTAGTGCATG | 62.04 | ↑ |
Vvi-miR477 | TCCCTCAAAGGCTTCCAATTT | 98.25 | vv-miR477 | TCCCTCAAAGGCTTCCAATTT | 21.82 | ↓ |
Vvi-miR479 | TGTGGTATTGGTTCGGCTCATC | 2922.60 | vv-miR479 | TGTGGTATTGGTTCGGCTCATC | 1131.41 | ↓ |
Vvi-miR482 | AATTGGAGAGTAGGAAAGCTT | 45.11 | vv-miR482 | AATTGGAGAGTAGGAAAGCTT | 1056.46 | ↑ |
Vvi-miR535a | TGACAACGAGAGAGAGCACGC | 763.18 | 0.00 | ▼ | ||
Vvi-miR535b | ACGAGAGAGAGCACGCTAGTCAG | 763.18 | vv-miR535b | ACGAGAGAGAGCACGCTAGTCAG | 0.09 | ↓ |
Vvi-miR535c | TGACAACGAGAGAGAGCACGC | 763.18 | vv-miR535c | TGACAACGAGAGAGAGCACGC | 83.42 | ↓ |
Vvi-miR828a | AGATGCTCATTTGAGGAAGCAA | 1.13 | vv-miR828a | AGATGCTCATTTGAGGAAGCAA | 5.32 | ↑ |