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Table 2 Conserved Vv-miRNAs identified and normalized counts (NC) in control and GA 3 treated grapevine berries

From: Grapevine microRNAs responsive to exogenous gibberellin

Control GA3treatment Identity
miRNA ID Sequences NC miRNA ID Sequences NC
Vvi-miR156a TTGACAGAAGAGAGGGAGCAC 8.81 vv-miR156a TTGACAGAAGAGAGGGAGCAC 513.79
Vvi-miR156b AACTGACAGAAGAGAGTGAGCAC 2308.90 vv-miR156b AACTGACAGAAGAGAGTGAGCAC 0.61
Vvi-miR156c TGACAGAAGAGAGTGAGCACAC 2214.31 vv-miR156c TGACAGAAGAGAGTGAGCACAC 0.17
Vvi-miR156d TGACAGAAGAGAGTGAGCAC 2321.38 vv-miR156d TGACAGAAGAGAGTGAGCAC 2331.59
Vvi-miR156e TGACAGAGGAGAGTGAGCAC 3.40 vv-miR156e TGACAGAGGAGAGTGAGCAC 14.83
Vvi-miR156f CTGTTGACAGAAGATAGAGAGCAC 5215.88 vv-miR156f CTGTTGACAGAAGATAGAGAGCAC 3.93
Vvi-miR156g GCTCTCTAGACTTCTGTCATC 5214.31 vv-miR156g GCTCTCTAGACTTCTGTCATC 0.61
Vvi-miR156i TTGACAGAAGATAGAGAGCAC 5214.31 vv-miR156i TTGACAGAAGATAGAGAGCAC 6093.28
   0.00 vv-miR159b CCTTGGAGTGAAGGGAGCT 0.17
Vvi-miR159c TTTGGATTGAAGGGAGCTCTA 74.61 vv-miR159c TTTGGATTGAAGGGAGCTCTA 582.11
Vvi-miR160a TCCTAGTTGGCATCAGAGGAG 1.66 vv-miR160a TCCTAGTTGGCATCAGAGGAG 0.09
Vvi-miR160b GCATGAGGGGAGTCAAGCAGG 1.66 vv-miR160b GCATGAGGGGAGTCAAGCAGG 4.19
Vvi-miR160c GCGTGCGAGGAGCCAAGCATA 3.75 vv-miR160c GCGTGCGAGGAGCCAAGCATA 4.54
Vvi-miR160d TGCCTGGCTCCCTGTATGCCA 4.71    0.00
Vvi-miR160e GCGTATGAGGAGCCATGCATA 4.71 vv-miR160e GCGTATGAGGAGCCATGCATA 2.27
   0.00 vv-miR160f TGCCTGGCTCCCTGTATGCCA 43.98
Vvi-miR162 TCGATAAACCTCTGCATCCAG 236.04 vv-miR162 TCGATAAACCTCTGCATCCAG 231.76
Vvi-miR164a TTGGAGAAGCAGGGCACGTGC 43.02 vv-miR164a TTGGAGAAGCAGGGCACGTGC 0.17
Vvi-miR164c TGGAGAAGCAGGGCACGTGCAT 43.19 vv-miR164c TGGAGAAGCAGGGCACGTGCAT 6.72
Vvi-miR164d TGGAGAAGCAGGGCACGTGCA 43.02 vv-miR164d TGGAGAAGCAGGGCACGTGCA 798.08
Vvi-miR166a TCTCGGACCAGGCTTCATTCCT 762.04 vv-miR166a TCTCGGACCAGGCTTCATTCCT 7.85
Vvi-miR166b TCGGACCAGGCTTCATTCCTC 3280.28 vv-miR166b TCGGACCAGGCTTCATTCCTC 15371.38
Vvi-miR166c TCGGACCAGGCTTCATTCCCC 21467.36    0.00
Vvi-miR166d GATTGTTGTCTGGCTCGAGGC 21492.15 vv-miR166d GATTGTTGTCTGGCTCGAGGC 1.05
Vvi-miR166e GGAATGTTGTCTGGCTCGAGG 21467.36 vv-miR166e GGAATGTTGTCTGGCTCGAGG 311.87
Vvi-miR166f GGAATGTTGGCTGGCTCGAGG 21506.81 vv-miR166f GGAATGTTGGCTGGCTCGAGG 18.24
Vvi-miR166g TTCGGACCAGGCTTCATTCCC 21509.60 vv-miR166g TTCGGACCAGGCTTCATTCCC 82.11
Vvi-miR166h TCGGACCAGGCTTCATTCCCC 22171.73 vv-miR166h TCGGACCAGGCTTCATTCCCC 22520.68
Vvi-miR167a TGAAGCTGCCAGCATGATCTGG 32.81 vv-miR167a TGAAGCTGCCAGCATGATCTGG 11.78
Vvi-miR167b TGAAGCTGCCAGCATGATCTAAG 616.06 vv-miR167b TGAAGCTGCCAGCATGATCTAAG 38.48
Vvi-miR167c TGAAGCTGCCAGCATGATCTC 134.12 vv-miR167c TGAAGCTGCCAGCATGATCTC 1901.57
Vvi-miR167d TGAAGCTGCCAGCATGATCTAG 424.87 vv-miR167d TGAAGCTGCCAGCATGATCTAG 1.75
Vvi-miR167e TGAAGCTGCCAGCATGATCTA 613.09 vv-miR167e TGAAGCTGCCAGCATGATCTA 2349.30
Vvi-miR168 TCGCTTGGTGCAGGTCGGGAA 2963.35 vv-miR168 TCGCTTGGTGCAGGTCGGGAA 2654.62
Vvi-miR169a CAGCCAAGGATGACTTGCCGG 13.09    0.00
Vvi-miR169b GGTCGAATTGAGCCAAGGATGG 5.58 vv-miR169b GGTCGAATTGAGCCAAGGATGG 0.35
Vvi-miR169c TCCGGCAAGTTGTCCTTGGCTAC 13.09 vv-miR169c TCCGGCAAGTTGTCCTTGGCTAC 0.70
Vvi-miR169d CAGCCAAGAATGATTTGCCGG 35.25 vv-miR169d CAGCCAAGAATGATTTGCCGG 105.50
Vvi-miR169e TAGCCAAGGATGACTTGCCT 0.44    0.00
Vvi-miR169f TGGGCAAGTTGTGTTTGGCTAC 0.35 vv-miR169f TGGGCAAGTTGTGTTTGGCTAC 0.26
Vvi-miR169g CAGCCAAGGATGACTTGCCGA 0.44 vv-miR169g CAGCCAAGGATGACTTGCCGA 6.54
Vvi-miR169h TGAGCCAAGGATGGCTTGCCGT 5.50 vv-miR169h TGAGCCAAGGATGGCTTGCCGT 7.42
Vvi-miR169i CTGGTCATGCACGGCTGGTTA 1.83 vv-miR169i CTGGTCATGCACGGCTGGTTA 0.09
Vvi-miR169j CAGCCAAGGATGACTTGCCGG 13.09    0.00
Vvi-miR169k AGCCAAGGATGACTTGCCGGA 13.09 vv-miR169k AGCCAAGGATGACTTGCCGGA 0.26
Vvi-miR169l TGAGCCAAGGATGACTTGCCGT 58.12 vv-miR169l TGAGCCAAGGATGACTTGCCGT 0.96
Vvi-miR169m TGAGCCAAGGATGACTTGCCG 54.45    0.00
Vvi-miR169n AAGCATCTGAGGCTCTATTTC 16.32 vv-miR169n AAGCATCTGAGGCTCTATTTC 186.82
Vvi-miR169o TGAGCCAAGGATGACTTGCCG 54.80 vv-miR169o TGAGCCAAGGATGACTTGCCG 13.53
Vvi-miR169p GCAAGCATCCGAGGCTCTGT 55.50 vv-miR169p GCAAGCATCCGAGGCTCTGT 3.66
Vvi-miR169q TAGAGCCAAGGATGACTTGCCG 16.40 vv-miR169q TAGAGCCAAGGATGACTTGCCG 6.37
Vvi-miR169r TGAGTCAAGGATGACTTGCCGA 4.71 vv-miR169r TGAGTCAAGGATGACTTGCCGA 0.79
Vvi-miR169s CAGCCAAGGATGACTTGCCGG 13.18    0.00
Vvi-miR169t GGCAAGTTGACTTGACTCAGT 1.66 vv-miR169t GGCAAGTTGACTTGACTCAGT 6.81
Vvi-miR169u GGCAAGTTGACTTGACTCTGT 2.71 vv-miR169u GGCAAGTTGACTTGACTCTGT 4.01
Vvi-miR169v AAGCCAAGGATGAATTGCCGG 4.36 vv-miR169v AAGCCAAGGATGAATTGCCGG 2.62
Vvi-miR169w CAGCCAAGGATGACTTGCCGG 13.18 vv-miR169w CAGCCAAGGATGACTTGCCGG 12.39
Vvi-miR169x TGAGTCAAGGATGACTTGCCGA 0.52 vv-miR169x TGAGTCAAGGATGACTTGCCGA 0.70
Vvi-miR171a TGTTGGGACGGCTCAATCAAA 4.71 vv-miR171a TGTTGGGACGGCTCAATCAAA 5.67
Vvi-miR171b TTGAGCCGCGTCAATATCTCC 4.36 vv-miR171b TTGAGCCGCGTCAATATCTCC 35.69
Vvi-miR171c GGATATTGGTGCGGTTCAATA 5.15 vv-miR171c GGATATTGGTGCGGTTCAATA 4.54
Vvi-miR171d TTGATTGAGCCGTGCCAATAT 5.15 vv-miR171d TTGATTGAGCCGTGCCAATAT 2.53
   0.00 vv-miR171e TGATTGAGCCGCGCCAATATC 0.09
   0.00 vv-miR171f TTGAGCCGCGCCAATATCACT 2.01
   0.00 vv-miR171h TTGAGCCGCGCCAATATCCCG 0.96
Vvi-miR171i TGATTGAGCCGTGCCAATATC 4.71 vv-miR171i TGATTGAGCCGTGCCAATATC 85.43
Vvi-miR172c GGAGCATCATCAAGATTCACA 0.09 vv-miR172c GGAGCATCATCAAGATTCACA 103.40
Vvi-miR172d AGAATCTTGATGATGCTGCAT 184.47 vv-miR172d AGAATCTTGATGATGCTGCAT 117.63
Vvi-miR319b TTGGACTGAAGGGAGCTCCC 0.35    0.00
Vvi-miR319c ATTGAATGATGCGGGAGACAA 0.35 vv-miR319c ATTGAATGATGCGGGAGACAA 20.68
Vvi-miR319e TTTGGACTGAAGGGAGCTCCT 18.59 vv-miR319e TTTGGACTGAAGGGAGCTCCT 7.94
Vvi-miR319f TGCTTGGACTGAAGGGAGC 0.35 vv-miR319f TGCTTGGACTGAAGGGAGC 3.40
Vvi-miR319g TTGGACTGAAGGGAGCTCCC 0.26 vv-miR319g TTGGACTGAAGGGAGCTCCC 1.40
Vvi-miR390 AAGCTCAGGAGGGATAGCGCC 1.75 vv-miR390 AAGCTCAGGAGGGATAGCGCC 160.73
   0.00 vv-miR393a ATCATGCTATCCCTTAGGAAC 1.66
   0.00 vv-miR393b GGAGGAGGCATCCAAAGGGAT 0.79
Vvi-miR394a TTGGCATTCTGTCCACCTCC 2.71    0.00
Vvi-miR394b TATTGGCATTCTGTCCACCTCC 2.53 vv-miR394b TATTGGCATTCTGTCCACCTCC 0.09
Vvi-miR394c TTGGCATTCTGTCCACCTCC 2.71 vv-miR394c TTGGCATTCTGTCCACCTCC 0.79
Vvi-miR395a CTGAAGTGTTTGGGGGAACTC 22.08    0.00
Vvi-miR395b CTGAAGTGTTTGGGGGAACTC 22.08    0.00
Vvi-miR395c CTGAAGTGTTTGGGGGAACTC 22.08    0.00
Vvi-miR395d CTGAAGTGTTTGGGGGAACTC 22.08    0.00
Vvi-miR395e CTGAAGTGTTTGGGGGAACTC 22.08    0.00
Vvi-miR395f CACTGAAGTGTTTGGGGGAAC 22.08 vv-miR395f CACTGAAGTGTTTGGGGGAAC 0.09
Vvi-miR395g GTTCCCCTGAGCACTTCATTG 22.16 vv-miR395g GTTCCCCTGAGCACTTCATTG 0.52
Vvi-miR395h CTGAAGTGTTTGGGGGAACTC 22.08    0.00
Vvi-miR395i CTGAAGTGTTTGGGGGAACTC 22.08    0.00
Vvi-miR395j CTGAAGTGTTTGGGGGAACTC 22.08    0.00
Vvi-miR395k GTTCCCTTGACCACTTCACTG 22.08 vv-miR395k GTTCCCTTGACCACTTCACTG 0.44
Vvi-miR395l CCCCTAGAGTTCCCCTGACCA 22.08 vv-miR395l CCCCTAGAGTTCCCCTGACCA 0.09
Vvi-miR395m CTGAAGTGTTTGGGGGAACTC 22.08 vv-miR395m CTGAAGTGTTTGGGGGAACTC 11.61
Vvi-miR396a CTCAAGAAAGCTGTGGGAGG 25.04 vv-miR396a CTCAAGAAAGCTGTGGGAGG 35.17
Vvi-miR396b TTCCACAGCTTTCTTGAACTT 53.23 vv-miR396b TTCCACAGCTTTCTTGAACTT 35.86
Vvi-miR396c TTCCACAGCTTTCTTGAACTG 13.53 vv-miR396c TTCCACAGCTTTCTTGAACTG 18.41
Vvi-miR396d GTTCAATAAAGCTGTGGGAAG 14.22 vv-miR396d GTTCAATAAAGCTGTGGGAAG 6.20
Vvi-miR397a TCATTGAGTGCAGCGTTGATG 7.59 vv-miR397a TCATTGAGTGCAGCGTTGATG 29.41
Vvi-miR398a CAAGGGAGTGGCACCTGAGAACA 0.09 vv-miR398a CAAGGGAGTGGCACCTGAGAACA 6.98
Vvi-miR398b GGTGTGACCTGAGAATCACATG 0.61 vv-miR398b GGTGTGACCTGAGAATCACATG 0.26
Vvi-miR398c TGTGTTCTCAGGTCGCCCCTG 0.61 vv-miR398c TGTGTTCTCAGGTCGCCCCTG 1.13
Vvi-miR399a GTGTGATTCTCCTTTGGCAGA 0.70 vv-miR399a GTGTGATTCTCCTTTGGCAGA 1.57
Vvi-miR399b TGCCAAAGGAGAGTTGCCCTG 0.26    0.00
Vvi-miR399c TGCCAAAGGAGAGTTGCCCTG 0.26 vv-miR399c TGCCAAAGGAGAGTTGCCCTG 0.09
Vvi-miR399d TCTGCCAAAGGAGATTTGCTC 1.48 vv-miR399d TCTGCCAAAGGAGATTTGCTC 0.26
Vvi-miR399e TGCCAAAGGAGATTTGCCCGG 3.58 vv-miR399e TGCCAAAGGAGATTTGCCCGG 10.56
Vvi-miR399g TGCCAAAGGAGATTTGCCCCT 9.08 vv-miR399g TGCCAAAGGAGATTTGCCCCT 1.31
Vvi-miR399h TGCCAAAGGAGAATTGCCCTG 0.52 vv-miR399h TGCCAAAGGAGAATTGCCCTG 0.96
Vvi-miR399i CGCCAAAGGAGAGTTGCCCTG 29.49 vv-miR399i CGCCAAAGGAGAGTTGCCCTG 14.05
Vvi-miR403a TTAGATTCACGCACAAACTCG 52.27    0.00
Vvi-miR403b TTAGATTCACGCACAAACTCG 52.62    0.00
Vvi-miR403c CGCACAAACTCGTGATCTGTC 52.27 vv-miR403c CGCACAAACTCGTGATCTGTC 0.09
Vvi-miR403d AGTTTGTGCGCGAATCCAACC 52.62 vv-miR403d AGTTTGTGCGCGAATCCAACC 4.36
Vvi-miR403e TTAGATTCACGCACAAACTCGC 52.18 vv-miR403e TTAGATTCACGCACAAACTCGC 0.17
Vvi-miR403f TTAGATTCACGCACAAACTCG 52.36 vv-miR403f TTAGATTCACGCACAAACTCG 586.04
Vvi-miR408 ACGGGGACGAGGTAGTGCATG 22.34 vv-miR408 ACGGGGACGAGGTAGTGCATG 62.04
Vvi-miR477 TCCCTCAAAGGCTTCCAATTT 98.25 vv-miR477 TCCCTCAAAGGCTTCCAATTT 21.82
Vvi-miR479 TGTGGTATTGGTTCGGCTCATC 2922.60 vv-miR479 TGTGGTATTGGTTCGGCTCATC 1131.41
Vvi-miR482 AATTGGAGAGTAGGAAAGCTT 45.11 vv-miR482 AATTGGAGAGTAGGAAAGCTT 1056.46
Vvi-miR535a TGACAACGAGAGAGAGCACGC 763.18    0.00
Vvi-miR535b ACGAGAGAGAGCACGCTAGTCAG 763.18 vv-miR535b ACGAGAGAGAGCACGCTAGTCAG 0.09
Vvi-miR535c TGACAACGAGAGAGAGCACGC 763.18 vv-miR535c TGACAACGAGAGAGAGCACGC 83.42
Vvi-miR828a AGATGCTCATTTGAGGAAGCAA 1.13 vv-miR828a AGATGCTCATTTGAGGAAGCAA 5.32
  1. Notes: ,,▲ ,, denote up-regulated, down-regulated, induced, repressed, un-affected, respectively.