Skip to main content

Table 3 Comparison of normalized counts (NC) of novel Vv-miRNAs between GA 3 treated and control grapevine berries

From: Grapevine microRNAs responsive to exogenous gibberellin

miRNA ID Mature sequences NC Identity of frequency
Control GA treatment
Vvi-miRC01 CTATGTTATAGGATCTTGGAT 9.16 17.19
Vvi-miRC01* CCAAGATACTATAACATGGTC 0.00 0.17
Vvi-miRC02 TCCCTTTGGAAGTGCTAAGCG 0.00 1.83
Vvi-miRC03 AGTGGTGGCAAGGATGAGCAA 0.00 0.52
Vvi-miRC04 TTTGGAATGATTTGTTGATGA 4.62 1.48
Vvi-miRC05 AAGATCTCCCATTGCATCTGA 0.00 0.52
Vvi-miRC06 TTTTTTGGTTATGGTTGGCTG 0.61 1.40
Vvi-miRC07 CTCAAGAAAGCTGTGGGAAAA 0.61 1.05
Vvi-miRC07* TTTCCACATCTTTCTTGAACT 0.09 0.17
Vvi-miRC08 AGAAGAACAAGTAGACTGAGC 0.00 0.96
Vvi-miRC09 TTATATAGGCTTTGAGGATGGA 0.00 1.92
Vvi-miRC10 TTTTAAAAAGGTTCGTCATTC 0.00 0.87
Vvi-miRC11 CCGTGACAAGTGGTATCAGAG 0.00 1.13
Vvi-miRC12 TCTGAAGTTTGAAGAGCTGTG 4.97 10.56
Vvi-miRC12* AGAGCAATCTACGAACAACAGGAA 0.09 0.09
Vvi-miRC13 TTGGCTTGGAGATGGATCATT 0.00 10.56
Vvi-miRC14 TTGGCTTGGAGATGGATCATT 0.00 10.56
Vvi-miRC15 TCAATTTGAGAGCTGGAAGAA 0.61 0.70
Vvi-miRC16 ATATTGGTAAATGAATGTTCG 0.00 1.40
Vvi-miRC17 AATTTCTTATGTTCATGATTG 0.00 0.79
Vvi-miRC18 AAGAGCAGTTGAACTGAAGCA 0.70 1.57
Vvi-miRC19 TCTGTCGCAGGAGAGATGATGC 1.66 4.19
Vvi-miRC20 GGAATGGGCTGATTGGGATA 2551.57 760.03
Vvi-miRC20* TTCCCAATGCCGCCCATTCCAA 94.07 208.55
Vvi-miRC21 CCAAGAGGGTGGAGTTCAGAT 0.00 1.48
Vvi-miRC21* CTGAACTCTCTCCCTCATGGCC 0.00 0.87
Vvi-miRC22 CTAAATTGCTTCGGGTCCTGC 0.00 6.63
Vvi-miRC22* AGGAGATGAGGTATGTTTACAT 0.00 5.93
Vvi-miRC23 AAACATGAGTCTGGACCTTGA 0.00 0.79
Vvi-miRC24 AAACATGAGTCTGGACCTTGA 0.00 0.79
Vvi-miRC25 TCTGTTTTCACTCTCATTAAG 0.00 1.13
Vvi-miRC25* TAGTGAGAATGAGTTGGGGAAG 0.00 0.09
Vvi-miRC26 TCGGAGAAGTGTGATGTGTAT 0.00 0.70
Vvi-miRC27 ATACCATGTGGAAAAGAGGAATC 6.72 5.85
Vvi-miRC28 ATTGGCAGAATATTCAAGGTTT 0.44 0.87
Vvi-miRC29 TTATTAGGAGGACATTTAGGTAT 2.88 3.49
Vvi-miRC30 TGCGGGTGGAAGAGAAGGAAG 5.67 3.49
Vvi-miRC31 TTCCTGCGGTTTCTCGGCGAC 0.96 0.96
Vvi-miRC32 TTTTCCTATGATTTCTTGGCA 0.87 0.79
Vvi-miRC32* CTGGGAAAGCGTGGGAAAACA 0.00 0.09
Vvi-miRC33 TTCCTATCGTTCCCGGGATTT 0.00 1.22
Vvi-miRC34 TGACCGGCTCTTATCTCTCATG 1.48 3.93
Vvi-miRC34* TGAAGATAAAGAGTCTCGTCTGG 0.35 0.09
Vvi-miRC35 GGAATGGATGGCATGGGAACCA 0.52 0.52
Vvi-miRC36 TGAGTAGTGGACTATCGCATG 14.57 1728.01
Vvi-miRC36* TGAGATAAGTCTGCTGCTCCAT 0.61 94.76
Vvi-miRC37 TGGATGCATGTAGCTTGTCAA 16.06 0.87
Vvi-miRC37* GACAAGTTACATACATCCAAG 1.05 0.17
Vvi-miRC38 TCCTTCGGCGTCGGCAAATCC 1.75 1.22
Vvi-miRC39 AAGGGTTTCTCACAGAGTTTA 0.00 0.79
Vvi-miRC39* AGCTCTGTTGGACTCTCTTTG 0.00 0.17
Vvi-miRC40 GAGGAGAATGTAGTGGGGTTA 0.52 0.44
Vvi-miRC41 CTTTGATCAGATATTGGATTG 0.00 1.40
Vvi-miRC41* AGCAGAGTTTGATAGAGGGC 0.00 0.09
Vvi-miRC42 AATGACATGAGTTGGAACTAA 0.00 0.87
Vvi-miRC43 GTTGGAAGCCGGTGGGGGACC 4389.70 425.65
Vvi-miRC44 GTTGGAAGCCGGTGGGGGACC 4389.70 425.65
Vvi-miRC45 GTTGGAAGCCGGTGGGGGACC 4389.70 425.65
Vvi-miRC46 GTTGGAAGTCGGTGGGGGAAC 1990.92 272.69
Vvi-miRC47 GGCGATTGTAAATATGGGTAA 3.75 1.13
Vvi-miRC48 TCTAGATTTGGAAGTAGGTCA 0.70 0.44
Vvi-miRC49 GTTGGAAGTCGGTGGGGGACC 1089.01 72.95
Vvi-miRC50 GTTGGAAGCCGGTGGGGGACC 4389.70 425.65
Vvi-miRC51 TGGGCTTGTGGAGAAGAAAGTGA 0.96 0.52
Vvi-miRC52 CATGGGCGGTTTGGTAAGAGG 2805.93 1401.92
Vvi-miRC52* TCTTACCAACACCTCCCATTCC 140.49 198.43
Vvi-miRC53 GGTATGGGAGGATTGGGGAGA 1305.32 437.43
Vvi-miRC53* TTCCCAAGACCCCCCATGCCAA 62.48 327.23
Vvi-miRC54 TCATACCTCGATCTTCGGTTTC 0.00 0.70
Vvi-miRC54* AATCTGAGATCGAGAATGAAA 0.00 0.09
Vvi-miRC55 ATTCGAACTCAAGACTAAGGT 0.00 41.54
Vvi-miRC56 GAAGCTCTTGAGGGGGACTG 378.18 60.38
Vvi-miRC56* ACTCTCCCTCAAGGGCTTCTG 12.13 1.31
Vvi-miRC57 AGGTGTAGATGCAAGTGCAGA 0.00 1.05
Vvi-miRC58 TTTAATTTACTAGAGATCTCT 1.13 1.40
Vvi-miRC59 GGAGTGAAATTGCAGTGACGG 0.00 1.13
Vvi-miRC60 TCAGCAGGAATTGGACCAGAA 2.88 3.75
Vvi-miRC61 ACAGTAGGAAATTGAAAGAGA 0.00 0.70
Vvi-miRC61* TCTTTCATTTTCCTACTTTTT 0.00 0.52
Vvi-miRC62 AAAGGCGAAGAAAAAGAAGATA 1.75 0.79
Vvi-miRC63 AATATGGAGGACTGTGTTCTT 0.61 1.75
Vvi-miRC63* GAACTCAGTTCCGGTACCATCTTCA 0.09 0.09
Vvi-miRC64 TTGGATTCGCGCACAAACTCG 0.00 1.13
Vvi-miRC65 TTGGATTCGCGCACAAACTCG 0.00 1.13
Vvi-miRC66 CAGCAGTTGCTATTGTGGTTG 0.87 8.38
Vvi-miRC67 AGAAGAGAGAGAGTACAGCTA 1.31 9.60
Vvi-miRC68 TGGTACCAGGAGGGCAACTGTC 0.00 1.05
Vvi-miRC68* TGTTGCCCTCCTGGTACCATC 0.00 0.09
Vvi-miRC69 TCAAGGGTCGAACGGCTTTGC 1.31 2.36
Vvi-miRC70 TTATGTGAGTGTTCGGCAAATC 0.79 2.62
Vvi-miRC71 TTAGATGATCATCAACAAACA 436.74 517.54
Vvi-miRC71* TTTTGTTGCTGGTCATCTAGTC 2.09 3.05
Vvi-miRC72 TGCTTATTAGGTCTGCTGGCA 0.00 0.61
Vvi-miRC73 TCAAAAGAGAAAATGTGGATG 0.52 0.79
Vvi-miRC73* TCCATCTTCTCTCTTTTTACA 0.00 0.09
Vvi-miRC74 TCGCAGGAGAGATGACGCCGT 52.97 110.21
Vvi-miRC74* AGCATCATTTCTCCTGCATAG 1.13 4.28
Vvi-miRC75 ATATTAGCAGCTGAGAACACA 1.40 0.00
Vvi-miRC76 CAGGACTGGCAGTGATGGTTA 1.13 0.00
Vvi-miRC77 GTGTTTTGCAGGATCAGACGG 0.70 0.00
Vvi-miRC78 TGGCTGAGAACTTGATGGTTA 2.71 0.00
Vvi-miRC79 TTCAAGTCAAAGTCGAACAAG 0.87 0.00
Vvi-miRC80 AGCGAAGTAGTTGTAGGGCTT 0.96 0.00
Vvi-miRC81 TTCGGAGGGAACTGACCGGTT 0.70 0.00
Vvi-miRC82 TGCCAAGAAGCACATTCCTCC 16.84 0.00
Vvi-miRC82* AGGAATGTGCTTCTTGGCATA 0.09 0.00
Vvi-miRC83 CAAGTGTGGGATTTTGGGTGGCT 0.52 0.00
Vvi-miRC84 GCAGCATCATGAAGATTCACA 0.52 0.00
Vvi-miRC84* GGAATCTTGATGATGCTGCAT 0.17 0.00
Vvi-miRC85 AGGTGCAGGTGAAGGTGCAGA 1.75 0.00
Vvi-miRC85* TGCATTTGCACCTGCACCTTA 0.96 0.00
Vvi-miRC86 GTAGCATCATCAAGATTCACA 1.66 0.00
Vvi-miRC87 GGAATGTTGTCTGGCTCGAGGT 0.70 0.00
Vvi-miRC88 ATGTATTTGAGGGAAAGCAAA 0.44 0.00
Vvi-miRC88* TGTTTTCCCTCAAAAACATGT 0.09 0.00
Vvi-miRC89 CTGCGGGTGGAAAAGGATTAGGC 6.81 0.00
Vvi-miRC89* CTCATCCTTTTCCATCGGCAGCA 0.35 0.00
Vvi-miRC90 TCTCAGCAACCAAGTAGAGCC 5.93 0.00
  1. Notes: ,,▲ ,, denote up-regulated, down-regulated, induced, repressed, un-affected, respectively; the symbol * denotes the complementary strands of miRNAs.