Table 2 Candidate TGMS-related genes
Query symbol | probeID | Description | E-Value | Subject symbol | logFC_Co27H/HH | logFC_Co27L/ Co27H | logFC_HL/HH |
|---|---|---|---|---|---|---|---|
Splicing | |||||||
LOC_Os06g08840 | OS.7772.2.A1_AT | OsRSZp21a | 5.00E-42 | AT4G31580.2 | 0.14 | -1.02 | -0.8 |
LOC_Os02g39720 | OsAffx.2920.1.S1_s_at | OsRSZp23 | 6.00E-39 | AT4G31580.2 | 0.37 | -1.62 | -1.4 |
LOC_Os03g25980 | OS.7952.1.S1_AT | Polypyrimidine tract-binding protein | 5.00E-172 | AT3G01150.2 | -0.12 | 1.1 | 1.04 |
LOC_Os11g07500 | OS.14143.1.S1_AT | HUA enhancer 2 | 0 | AT2G06990.1 | -0.03 | 1.4 | 1.4 |
LOC_Os12g18140 | OS.47607.1.S1_AT | Superkiller viralicidic activity 2-like 2 | 0 | AT1G59760.1 | -0.16 | 1.24 | 0.99 |
LOC_Os08g40560 | OS.15831.2.S1_AT | ZOS8-11 | 0 | AT2G27100.1 | -2.28 | 2.4 | 0.06 |
OSAFFX.6095.1.S1_S_AT | -0.87 | 1.64 | 0.73 | ||||
OS.15831.3.S1_AT | 0.29 | 1.89 | 2.15 | ||||
OS.15831.3.S1_X_AT | 0.14 | 1.81 | 1.73 | ||||
LOC_Os01g72834 | OS.6252.1.S1_AT | RNA recognition motif containing protein | 8.00E-52 | AT1G33470.2 | -0.18 | 1.04 | 0.87 |
LOC_Os03g15890 | OS.12705.1.S1_AT | RNA recognition motif containing protein | 3.00E-37 | AT1G07350.2 | -0.35 | 1.5 | 1.29 |
OS.12705.2.S1_X_AT | -0.17 | 1.09 | 1.11 | ||||
LOC_Os05g30980 | OS.8371.1.S1_X_AT | RNA recognition motif containing protein | 3.00E-126 | AT4G03110.2 | -0.19 | 1.06 | 0.78 |
OS.8371.2.S1_AT | -0.16 | 1.1 | 0.91 | ||||
mRNA processing | |||||||
LOC_Os06g38980 | OS.51905.1.S1_AT | Polyadenylate-binding protein | 5.00E-154 | AT1G22760.1 | -0.5 | 1.4 | 0.7 |
OSAFFX.5057.1.S1_S_AT | -0.04 | 1.3 | 1.53 | ||||
Translation initiation | |||||||
LOC_Os05g51500 | OS.12337.1.S1_AT | eIF5B | 0 | AT1G76810.1 | -0.25 | 1.59 | 1.09 |
OS.12337.2.S1_X_AT | 0.2 | 1.27 | 1.32 | ||||
Ribosomal proteins | |||||||
LOC_Os08g03450 | OS.50740.1.S1_AT | Ribosomal protein L37 | 8.00E-41 | AT1G15250.1 | -0.6 | 2.34 | 1.86 |
OS.50740.1.S1_X_AT | 0.51 | 2.74 | 2.94 | ||||
LOC_Os01g64090 | OSAFFX.2398.1.S1_AT | Ribosomal protein L1p/L10e | 0 | AT1G08360.1 | -0.01 | 1.27 | 1.33 |
LOC_Os01g69950 | OS.4997.1.S1_S_AT | Ribosomal protein L27 | 2.00E-58 | AT5G40950.1 | 0.2 | 1.08 | 1.38 |
OS.51456.1.S1_AT | 0.02 | 1.2 | 1.14 | ||||
LOC_Os07g12250 | OS.14565.1.S1_AT | Ribosomal protein L24 | 0 | AT2G36620.1 | 0.06 | 1.09 | 1.22 |
Aminoacyl-tRNA synthetases | |||||||
LOC_Os01g06510 | OS.46028.1.S1_AT | Arginyl-tRNA synthetase | 0 | AT4G26300.1 | -0.14 | 1.87 | 1.55 |
LOC_Os01g37837 | OS.5952.2.S1_S_AT | seryl-tRNA synthetase, putative, expressed | 2.00E-79 | AT5G27470.1 | -0.1 | 1.1 | 1.08 |
LOC_Os01g54020 | OS.14456.1.S1_AT | tRNA synthetase | 2.00E-147 | AT2G25840.3 | -0.41 | 1.83 | 1.37 |
LOC_Os02g09100 | OSAFFX.2548.1.S1_AT | Isoleucyl-tRNA synthetase | 0 | AT4G10320.1 | -0.63 | 2.66 | 2.09 |
LOC_Os03g02100 | OS.33311.1.S1_AT | valyl-tRNA synthetase | 0 | AT1G14610.1 | -0.26 | 2.01 | 1.71 |
LOC_Os03g38980 | OS.27850.1.S1_AT | tRNA synthetases class II domain containing protein | 0 | AT3G11710.1 | 0 | 1.19 | 1.2 |
LOC_Os10g10244 | OS.11722.1.S1_A_AT | alanyl-tRNA synthetase | 0 | AT1G50200.2 | -0.13 | 1.15 | 1 |
Translation termination | |||||||
LOC_Os04g20220 | OS.16925.1.S2_AT | Elongation factor Tu | 0 | AT1G18070.3 | -0.07 | 1.01 | 0.97 |
OS.7254.1.S1_AT | 0.01 | 1.23 | 1.34 | ||||
LOC_Os05g19630 | OS.7254.2.S1_X_AT | Peptide chain release factor protein | 4.00E-141 | AT2G47020.2 | -0.13 | 1.24 | 1.09 |
Other translation factors | |||||||
LOC_Os09g06230 | OS.46327.1.S1_AT | serine/threonine-protein kinase 16 | 8.00E-138 | AT5G08160.2 | 0 | 1.42 | 1.23 |
LOC_Os05g05450 | OS.18996.1.S1_AT | MA3 domain containing protein | 2.00E-159 | AT5G17930.1 | -0.3 | 1.3 | 1.13 |
LOC_Os06g10620 | OS.6853.1.S1_AT | Transcription elongation factor SPT5 homolog 1 | 0 | AT4G08350.1 | -0.18 | 1.07 | 0.97 |