Skip to main content

Table 2 Candidate TGMS-related genes

From: Genes associated with thermosensitive genic male sterility in rice identified by comparative expression profiling

Query symbol probeID Description E-Value Subject symbol logFC_Co27H/HH logFC_Co27L/ Co27H logFC_HL/HH
Splicing
LOC_Os06g08840 OS.7772.2.A1_AT OsRSZp21a 5.00E-42 AT4G31580.2 0.14 -1.02 -0.8
LOC_Os02g39720 OsAffx.2920.1.S1_s_at OsRSZp23 6.00E-39 AT4G31580.2 0.37 -1.62 -1.4
LOC_Os03g25980 OS.7952.1.S1_AT Polypyrimidine tract-binding protein 5.00E-172 AT3G01150.2 -0.12 1.1 1.04
LOC_Os11g07500 OS.14143.1.S1_AT HUA enhancer 2 0 AT2G06990.1 -0.03 1.4 1.4
LOC_Os12g18140 OS.47607.1.S1_AT Superkiller viralicidic activity 2-like 2 0 AT1G59760.1 -0.16 1.24 0.99
LOC_Os08g40560 OS.15831.2.S1_AT ZOS8-11 0 AT2G27100.1 -2.28 2.4 0.06
OSAFFX.6095.1.S1_S_AT -0.87 1.64 0.73
OS.15831.3.S1_AT 0.29 1.89 2.15
OS.15831.3.S1_X_AT 0.14 1.81 1.73
LOC_Os01g72834 OS.6252.1.S1_AT RNA recognition motif containing protein 8.00E-52 AT1G33470.2 -0.18 1.04 0.87
LOC_Os03g15890 OS.12705.1.S1_AT RNA recognition motif containing protein 3.00E-37 AT1G07350.2 -0.35 1.5 1.29
OS.12705.2.S1_X_AT -0.17 1.09 1.11
LOC_Os05g30980 OS.8371.1.S1_X_AT RNA recognition motif containing protein 3.00E-126 AT4G03110.2 -0.19 1.06 0.78
OS.8371.2.S1_AT -0.16 1.1 0.91
mRNA processing
LOC_Os06g38980 OS.51905.1.S1_AT Polyadenylate-binding protein 5.00E-154 AT1G22760.1 -0.5 1.4 0.7
OSAFFX.5057.1.S1_S_AT -0.04 1.3 1.53
Translation initiation
LOC_Os05g51500 OS.12337.1.S1_AT eIF5B 0 AT1G76810.1 -0.25 1.59 1.09
OS.12337.2.S1_X_AT 0.2 1.27 1.32
Ribosomal proteins
LOC_Os08g03450 OS.50740.1.S1_AT Ribosomal protein L37 8.00E-41 AT1G15250.1 -0.6 2.34 1.86
OS.50740.1.S1_X_AT 0.51 2.74 2.94
LOC_Os01g64090 OSAFFX.2398.1.S1_AT Ribosomal protein L1p/L10e 0 AT1G08360.1 -0.01 1.27 1.33
LOC_Os01g69950 OS.4997.1.S1_S_AT Ribosomal protein L27 2.00E-58 AT5G40950.1 0.2 1.08 1.38
OS.51456.1.S1_AT 0.02 1.2 1.14
LOC_Os07g12250 OS.14565.1.S1_AT Ribosomal protein L24 0 AT2G36620.1 0.06 1.09 1.22
Aminoacyl-tRNA synthetases
LOC_Os01g06510 OS.46028.1.S1_AT Arginyl-tRNA synthetase 0 AT4G26300.1 -0.14 1.87 1.55
LOC_Os01g37837 OS.5952.2.S1_S_AT seryl-tRNA synthetase, putative, expressed 2.00E-79 AT5G27470.1 -0.1 1.1 1.08
LOC_Os01g54020 OS.14456.1.S1_AT tRNA synthetase 2.00E-147 AT2G25840.3 -0.41 1.83 1.37
LOC_Os02g09100 OSAFFX.2548.1.S1_AT Isoleucyl-tRNA synthetase 0 AT4G10320.1 -0.63 2.66 2.09
LOC_Os03g02100 OS.33311.1.S1_AT valyl-tRNA synthetase 0 AT1G14610.1 -0.26 2.01 1.71
LOC_Os03g38980 OS.27850.1.S1_AT tRNA synthetases class II domain containing protein 0 AT3G11710.1 0 1.19 1.2
LOC_Os10g10244 OS.11722.1.S1_A_AT alanyl-tRNA synthetase 0 AT1G50200.2 -0.13 1.15 1
Translation termination
LOC_Os04g20220 OS.16925.1.S2_AT Elongation factor Tu 0 AT1G18070.3 -0.07 1.01 0.97
OS.7254.1.S1_AT 0.01 1.23 1.34
LOC_Os05g19630 OS.7254.2.S1_X_AT Peptide chain release factor protein 4.00E-141 AT2G47020.2 -0.13 1.24 1.09
Other translation factors
LOC_Os09g06230 OS.46327.1.S1_AT serine/threonine-protein kinase 16 8.00E-138 AT5G08160.2 0 1.42 1.23
LOC_Os05g05450 OS.18996.1.S1_AT MA3 domain containing protein 2.00E-159 AT5G17930.1 -0.3 1.3 1.13
LOC_Os06g10620 OS.6853.1.S1_AT Transcription elongation factor SPT5 homolog 1 0 AT4G08350.1 -0.18 1.07 0.97
  1. HH and HL refer to H1493 plants grown at high temperature and low temperature, respectively, while Co27H and Co27L refer to TGMS-Co27 plants grown at high temperature and low temperature, respectively. Significant changes (p-value < 0.05; fold change ≥ 2) are indicated by boldface.
\