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Table 5 Summary of QTL for root total pigment estimate (RTPE) and anthocyanin pigments (Cy3XG, Cy3XGG, Cy3XSGG and Cy3XFGG) in the 70349 F 2 population

From: A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation

Trait QTL ID Chromosome Position (cM) LOD value 1.5 LOD support interval Nearest marker % variation explained
RTPE Q1 3 49.1 26.7 48.1-49.5 K2287 50.5
  Q2 1 63.0 3.7 53.0-81.0 K1664 4.9
Cy3XG Q1 3 50.7 14.8 47.9-55.1 GSSR-017 26.4
Q2 8 56.1 7.2 47.1-64.1 K0973 11.3
Q3 2 68.5 6.2 67.8-69.3 K2669 9.6
Q4 6 0 3.6 0-7.0 K1768 5.3
Cy3XGG Q1 3 27.1 104.7 27.0-27.7 Raa1/K0149 73.3
Q2 3 50.1 84.2 49.5-50.4 K0627 36.6
Q3 1 74.0 71.4 73.0-75.0 K1964 23.4
Cy3XSGG Q1 3 44.1 41.6 43.1-46.1 P3 51.7
Q2 3 25.9 17.5 24.1-27.7 K1323 13.9
Q3 6 49.0 8.4 30.1-41.5 K2617 5.7
Cy3XFGG Q1 3 44.1 66.8 43.1-45.0 P3 59.2
Q2 3 27.1 38.3 25.1-27.7 K0149 18.9
  Q3 4 19.1 13.9 17.1-21.1 K3591 4.4