Alkane hydroxylase genes in psychrophile genomes and the potential for cold active catalysis

BMC Genomics

Table 1 Occurrence of conserved protein family (pfam) domains linked to alkane hydroxylases (AH) in each dataset

pfam domain	AH example	Psychrophile	Mesophile	Uniprot	AH candidate, psychrophile	AH candidate, mesophile
¹AMO	¹⁰PMMO subunit A	0	0	48	0	0
²AmoC	PMMO subunit C	0	0	63	0	0
³Bac_luciferase	LadA	18	51	7	3	4
⁴FA_desaturase	AlkB	32	40	320	8	10
⁵MeMO_Hyd_G	¹¹SMMO subunit G	0	0	17	0	0
⁶Monooxygenase_B	PMMO subunit B	0	0	46	0	0
⁷p450	p450	11	10	145	9	9
⁸Phenol_Hydrox	¹²PMO small subunit	0	0	164	0	0
⁹Pyr_redox_3	AlmA	176	196	35	6	18

Abbreviations for pfam are: ¹ammonia monooxygenase, ²ammonia monooxygenase subunit C, ³Bacterial luciferase, ⁴fatty acid desaturase, ⁵methane monooxygenase hydrolase chain G, ⁶monooxygenase subunit B, ⁷cytochrome p450, ⁸phenol hydroxylase, and ⁹pyridine nucleotide-disulphide oxidoreductase; for AH example are: ¹⁰particulate methane monooxygenase, ¹¹soluble methane monooxygenase, and ¹²propane monooxygenase.

ISSN: 1471-2164