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Table 1 Statistics of sRNA sequences from the CT and NT libraries

From: Identification of chilling stress-responsive tomato microRNAs and their target genes by high-throughput sequencing and degradome analysis

Type NT CT
Number of total sRNA Percentage of total (%) Number of unique sRNA Percentage of unique (%) Number of total sRNA Percentage of total (%) Number of unique sRNA Percentage of unique (%)
Raw reads 9,919,778 100.00 2,280,543 100.00 6,199,678 100.00 1,521,423 100.00
3ADT&length filtera 1,432,000 14.44 333,989 14.65 1,009,234 16.28 196,123 12.89
Junk reads 27,989 0.28 14,986 0.66 14,948 0.24 8,225 0.54
Rfamb 1,181,057 11.91 118,282 5.19 795,804 12.84 95,041 6.25
mRNA 4,132 0.04 2,480 0.11 3,320 0.05 2,007 0.13
Repeatsc 63,383 0.64 20,334 0.89 50,626 0.82 16,844 1.11
rRNA 860,830 8.68 72,264 0.73 524,172 8.45 53,070 0.86
tRNA 197,083 1.99 19,182 0.19 184,888 2.98 19,919 0.32
snoRNA 17,886 0.18 5,419 0.05 17,466 0.28 4,893 0.08
snRNA 15,389 0.16 5,618 0.06 12,882 0.21 4,598 0.07
other Rfam RNA 89,869 0.91 15,799 0.16 56,396 0.91 12,561 0.20
Clean reads 7,231,609 72.90 1,795,513 78.73 4,342,604 70.05 1,208,259 79.42
  1. areads lacking three ADTs or with lengths <17 nt or >25 nt were removed.
  2. bcollection of many common noncoding RNA families other than micro RNAs; http://rfam.janelia.org.
  3. cdownloaded from http://www.girinst.org/repbase.