Table 1 Statistics of sRNA sequences from the CT and NT libraries
Type | NT | CT | ||||||
|---|---|---|---|---|---|---|---|---|
Number of total sRNA | Percentage of total (%) | Number of unique sRNA | Percentage of unique (%) | Number of total sRNA | Percentage of total (%) | Number of unique sRNA | Percentage of unique (%) | |
Raw reads | 9,919,778 | 100.00 | 2,280,543 | 100.00 | 6,199,678 | 100.00 | 1,521,423 | 100.00 |
3ADT&length filtera | 1,432,000 | 14.44 | 333,989 | 14.65 | 1,009,234 | 16.28 | 196,123 | 12.89 |
Junk reads | 27,989 | 0.28 | 14,986 | 0.66 | 14,948 | 0.24 | 8,225 | 0.54 |
Rfamb | 1,181,057 | 11.91 | 118,282 | 5.19 | 795,804 | 12.84 | 95,041 | 6.25 |
mRNA | 4,132 | 0.04 | 2,480 | 0.11 | 3,320 | 0.05 | 2,007 | 0.13 |
Repeatsc | 63,383 | 0.64 | 20,334 | 0.89 | 50,626 | 0.82 | 16,844 | 1.11 |
rRNA | 860,830 | 8.68 | 72,264 | 0.73 | 524,172 | 8.45 | 53,070 | 0.86 |
tRNA | 197,083 | 1.99 | 19,182 | 0.19 | 184,888 | 2.98 | 19,919 | 0.32 |
snoRNA | 17,886 | 0.18 | 5,419 | 0.05 | 17,466 | 0.28 | 4,893 | 0.08 |
snRNA | 15,389 | 0.16 | 5,618 | 0.06 | 12,882 | 0.21 | 4,598 | 0.07 |
other Rfam RNA | 89,869 | 0.91 | 15,799 | 0.16 | 56,396 | 0.91 | 12,561 | 0.20 |
Clean reads | 7,231,609 | 72.90 | 1,795,513 | 78.73 | 4,342,604 | 70.05 | 1,208,259 | 79.42 |