Identification of chilling stress-responsive tomato microRNAs and their target genes by high-throughput sequencing and degradome analysis

Table 3 Functional description of target genes cleaved by novel miRNAs from the CT and NT libraries

miRNA	Target gene NO.	Target gene description	Annotation
			GO	KEGG
PC-46-5p	SGN-E548613	Probable protein phosphatase 2C 35-like	P2C65	-
PC-58-5p	SGN-E233471	Receptor-like protein kinase HAIKU2-like	IKU2	Protein-serine/threonine kinase
PC-58-5p	SGN-E236245, SGN-E244660, SGN-E232041 and SGN-E378026	As above	As above	-
PC-75-3p	SGN-E263621, SGN-E355515, SGN-E356830, SGN-E356831 and SGN-E707134	Uncharacterized protein	AGO2	Argonaute
PC-89-5p	SGN-E746319	Bidirectional sugar transporter SWEET11-like	SWT11	-
PC-93-3p	SGN-E226448 and SGN-E703722	60S ribosomal protein L8-like	RL8	Large subunit ribosomal protein L8e
PC-93-3p	SGN-E287356, SGN-E708964 and SGN-E713893	Bibosomal protein L2-like	RL8	As above
PC-102-5p	SGN-E233896, SGN-E350418, SGN-E351849, SGN-E352584, SGN-E353944, SGN-E701432, SGN-E705552, SGN-E713099 and SGN-E713896	Cellulose synthase A catalytic subunit 1 [UDP-forming]-like	CESA1	Cellulose synthase A
PC-117-5p	SGN-E720902	18.5 kDa class I heat shock protein-like isoform 1	HSP11	-
PC-125-3p	SGN-E294611 and SGN-E705851	Xyloglucan endotransglucosylase/hydrolase protein	XTH32	Xyloglucan:xyloglucosyl transferase
PC-146-5p	SGN-E208808, SGN-E254753, SGN-E262673, SGN-E269493 and SGN-E303554	Inositol-pentakisphosphate 2-kinase-like	IPPK	Inositol-pentakisphosphate 2-kinase

ISSN: 1471-2164