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Table 3 Functional description of target genes cleaved by novel miRNAs from the CT and NT libraries

From: Identification of chilling stress-responsive tomato microRNAs and their target genes by high-throughput sequencing and degradome analysis

miRNA Target gene NO. Target gene description Annotation
PC-46-5p SGN-E548613 Probable protein phosphatase 2C 35-like P2C65 -
PC-58-5p SGN-E233471 Receptor-like protein kinase HAIKU2-like IKU2 Protein-serine/threonine kinase
SGN-E236245, SGN-E244660, SGN-E232041 and SGN-E378026 As above As above -
PC-75-3p SGN-E263621, SGN-E355515, SGN-E356830, SGN-E356831 and SGN-E707134 Uncharacterized protein AGO2 Argonaute
PC-89-5p SGN-E746319 Bidirectional sugar transporter SWEET11-like SWT11 -
PC-93-3p SGN-E226448 and SGN-E703722 60S ribosomal protein L8-like RL8 Large subunit ribosomal protein L8e
SGN-E287356, SGN-E708964 and SGN-E713893 Bibosomal protein L2-like RL8 As above
PC-102-5p SGN-E233896, SGN-E350418, SGN-E351849, SGN-E352584, SGN-E353944, SGN-E701432, SGN-E705552, SGN-E713099 and SGN-E713896 Cellulose synthase A catalytic subunit 1 [UDP-forming]-like CESA1 Cellulose synthase A
PC-117-5p SGN-E720902 18.5 kDa class I heat shock protein-like isoform 1 HSP11 -
PC-125-3p SGN-E294611 and SGN-E705851 Xyloglucan endotransglucosylase/hydrolase protein XTH32 Xyloglucan:xyloglucosyl transferase
PC-146-5p SGN-E208808, SGN-E254753, SGN-E262673, SGN-E269493 and SGN-E303554 Inositol-pentakisphosphate 2-kinase-like IPPK Inositol-pentakisphosphate 2-kinase