Table 2 Effects of sequence improvement on the annotation of R-genes
Gene Id1 | Class2 | Sequence changes3 | Notes |
|---|---|---|---|
MELO3C004258 | TN | No | 3′-partial |
MELO3C004259 | TNL | (T)14 -- > (T)11 (I) | |
(T)10 -- > (T)9 (I) | |||
MELO3C004260 | TN | No | 3′-partial |
MELO3C004262 | TNL | (T)7 -- > (T)8 (I) | Additional a.a.s (gap closed) |
(T)4 -- > (T)3 (I) | |||
1 T deleted (I) | |||
20 N - > [559 bp (I + E) + 30 N (in poly(AT), I)] | |||
MELO3C004266 | TNL | (N)5054 gap closed (E) | Additional a.a.s (gap closed) |
(CTATAATTG) -- > (CATTG) (E) | |||
(TGTCGTTTA) -- > (T9GCGTTA) (I) | |||
(TTATA9T) -- > (TA9T) (I) | |||
(A6CA5G) -- > (A7CA6G) (I) | |||
MELO3C004288 | N | No | 5′- and 3′-partial |
MELO3C004289 | TNL | (N)767 gap closed (E) | Additional a.a.s (gap closed) |
(A)20 -- > (A)26 (I) | |||
(A)16 -- > (A)24 (I) | |||
(T)7(A)11 -- > (T)8(A)1o (I) | |||
MELO3C004290 | TN | (N)20 - > (N)1 (E) | 3′-partial |
MELO3C004291 | TN | (N)2153 gap closed (E) | |
(CA5CCT12) -- > (CAAT10) (I) | 3′-partial | ||
(CTTTTA13) -- > (CTTTA11) (I) | Additional a.a.s (gap closed) | ||
(GAAAG) -- > (GAG) (E) | |||
MELO3C004292 | TNL | (A)14 -- > (A)7 (I) | |
(AA) deleted (I) | |||
(A)21 -- > (A)15 (I) | |||
MELO3C004294 | TNL | (AA) deleted (I) | |
MELO3C004301 | TNL | (N)73 - > (N)28 (I) | (N)28 in poly(TA) (intron) |
(TACCA28GAAA) -- > (TCCA28GA) (I) | |||
(A10CCAAAG) -- > (A13CCAAAAG) (I) | |||
(AAAAGTTTA6) -- > (AAAAGTTTCA6) (I) | |||
(GAAAGTATA5TCA) -- > (GAAAGTATAAATCA) (I) | |||
(TTA10TTTGAAAA) -- > (A11TGAAAA) (I) | |||
MELO3C004302-4303 4 | NL | (CTTGAATGAAACTTA) -- > (CTTGAAC) (E) | 5′-partial5 |
(GTGAAACTTA11CATGG) -- > (GTA8CATGG) (I) | |||
(TACAATT) -- > (TACTT) (E) | |||
(CTA11CAT) -- > (CTA8CAT) (E) | |||
MELO3C004309-4310 6 | TNL | (N)78 gap closed (I) | |
(GTTCCGTATTCTAATTAT4ACT3) -- > (GTCCGATCAATAT3ACT) (I) | |||
(TAT6C) -- > (TATTC) (E) | |||
MELO3C004311 | TN | (N)30 gap closed (E) | 3′-partial |
(GA4TTTACT) -- > (GA5TACT) (I) | |||
MELO3C004312 | TN | (N)468 gap closed (introns + exons) | 3′-partial |
Additional a.a.s (gap closed) | |||
MELO3C004313 | TN | (N)20 gap closed (E) | 3′-partial |
Additional a.a.s (gap closed) | |||
MELO3C004317 | CNL | (N)1414 gap closed (E + I) | Additional a.a.s (gap closed) |
(N)4442 gap closed (exons + introns) | |||
MELO3C004318 | CN | (N)4962 gap closed (exons + introns) | 3′-partial |
Additional a.a.s (gap closed) | |||
MELO3C004320 | NL | (N)4489 -- > (N)2460 (introns + exon) | Add. a.a.s (gap partially solved) |
MELO3C004321 | CNL | (N)3747 gap closed (E) | Additional a.a.s (gap closed) |
MELO3C004323 | CN | No | 3′-partial |
MELO3C004324 | NL | No |