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Table 1 Predicted repetitive content in the Mycosphaerella graminicola genome

From: The landscape of transposable elements in the finished genome of the fungal wheat pathogen Mycosphaerella graminicola

Method

Repetitive bases

Percent repetitive

RECON, parsed

4,629,313

11.7

RepeatMasker - RepBase Update

467,778

1.2

RepeatMasker - RECON, parsed

6,921,597

17.4

RepeatMasker - RECON, parsed, nolow*

6,634,996

16.7

RepeatMasker - RepeatScout

7,400,585

18.6

  1. *RepeatMasker nolow option, does not mask the low-complexity DNA or simple repeats.
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BMC Genomics

ISSN: 1471-2164

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