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Table 2 Classification of Mycosphaerella graminicola repetitive families identified de novo by using RECON

From: The landscape of transposable elements in the finished genome of the fungal wheat pathogen Mycosphaerella graminicola

Class Repeat class (# families) Repeat type Total length (bp)* Percent of repetitive content Percent of genome
Class I LTR Retrotransposon (21) Ty1-Copia 1,039,062 15.7 2.6
   Ty3-Gypsy 1,803,457 27.2 4.5
   Unclassified 766,193 11.5 1.9
Subtotal    3,608,712 54.4 9.1
  Non LTR Retrotransposon (4) Tad1-like 697,083 10.5 1.8
   Unclassified 371,533 5.6 0.9
Subtotal    1,068,616 16.1 2.7
Class II DNA Transposon (15) CACTA En/Spm 78,909 1.2 0.2
   hAT 70,346 1.1 0.2
   Tc1-Mariner 58,977 0.9 0.1
   Tc5/Pogo 44,941 0.7 0.1
   Unclassified 228,727 3.4 0.6
  MITEs (13)   98,726 1.5 0.2
  Helitron (3)   390,961 5.9 1.0
Subtotal    971,587 14.6 2.4
Unclassified Unclassified (37) Unclassified 986,081 14.9 2.5
Total    6,634,996   16.7
  1. *These repeat estimates were calculated using families containing at least 10 members.