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Table 2 Classification of Mycosphaerella graminicola repetitive families identified de novo by using RECON

From: The landscape of transposable elements in the finished genome of the fungal wheat pathogen Mycosphaerella graminicola

Class

Repeat class (# families)

Repeat type

Total length (bp)*

Percent of repetitive content

Percent of genome

Class I

LTR Retrotransposon (21)

Ty1-Copia

1,039,062

15.7

2.6

  

Ty3-Gypsy

1,803,457

27.2

4.5

  

Unclassified

766,193

11.5

1.9

Subtotal

  

3,608,712

54.4

9.1

 

Non LTR Retrotransposon (4)

Tad1-like

697,083

10.5

1.8

  

Unclassified

371,533

5.6

0.9

Subtotal

  

1,068,616

16.1

2.7

Class II

DNA Transposon (15)

CACTA En/Spm

78,909

1.2

0.2

  

hAT

70,346

1.1

0.2

  

Tc1-Mariner

58,977

0.9

0.1

  

Tc5/Pogo

44,941

0.7

0.1

  

Unclassified

228,727

3.4

0.6

 

MITEs (13)

 

98,726

1.5

0.2

 

Helitron (3)

 

390,961

5.9

1.0

Subtotal

  

971,587

14.6

2.4

Unclassified

Unclassified (37)

Unclassified

986,081

14.9

2.5

Total

  

6,634,996

 

16.7

  1. *These repeat estimates were calculated using families containing at least 10 members.