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Table 3 Randomness of repetitive sequence distribution along each Mycosphaerella graminicola chromosome using a non-parametric runs test

From: The landscape of transposable elements in the finished genome of the fungal wheat pathogen Mycosphaerella graminicola

 

Chromosome

Statistic

1

2

3

4

5

6

7

8

9

10

11

12

13

14

15

16

17

18

19

20

21

n

122

78

70

58

58

54

54

49

43

34

33

30

24

16

13

13

12

12

11

10

9

n1

35

26

23

17

24

22

18

18

17

12

10

13

9

6

6

5

4

4

6

6

4

n0

87

52

47

41

34

32

36

31

26

22

23

17

15

10

7

8

8

8

5

4

5

Runs

55

36

31

21

29

22†

19

15†

19

11†

13

13

7

10

7

6

5†

7†

5†

4

6

P value

     

2.7 e-2

 

1.9 e-6

 

1.3 e-4

      

1.5 e-2

1.5 e-2

2.7 e-2

  
  1. Each chromosome was divided into non-overlapping 50-kb bins. Repetitive content in each bin was compared to the chromosomal average repetitive content and each bin was scored either 1 (bin repetitive content greater than chromosomal average) or 0 (bin repetitive content lower than chromosomal average). Each consecutive occurence of 0 s and 1 s was calculated as a run. n, the total number of observations; n1, count of occurrences of ones; n0, count of occurrences of zeros; Runs, number of consecutive occurrences or runs of ones and zeros. †P < 0.0.
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BMC Genomics

ISSN: 1471-2164

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