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Table 4 Nested clusters of repetitive elements in the Mycosphaerella graminicola genome with an LTR retrotransposon as base element and a verified target site duplication (TSD)

From: The landscape of transposable elements in the finished genome of the fungal wheat pathogen Mycosphaerella graminicola

Chr Cluster start Cluster end Base family Cluster size (bp) Target site duplication Internal family§
1 910,151 924,049 49 13,898 GGTAG 15
1 3,757,104 3,770,311 115 13,207 CCTAC 263
2 162,839 175,222 242 12,383 CTTAG 49
2 811,149 825,327 242 14,178 CTGTG 623
2 1,675,912 1,693,177 15 17,265 CGAC 242
2 1,868,450 1,894,757 263 26,307 AAGGT/C (2477 (495, 623))
2 3,605,891 3,620,926 15 15,035 ACAGG 623
3 575,530 603,863 940 28,333 ATTGA (263 (623, 115))
3 787,112 832,923 495 45,811 CTAC (2477, 623, 633 (623), 49 (115))
3 1,573,516 1,594,725 495 21,209 CCAG (1045, 2477)
3 2,416,365 2,433,023 15 16,658 CTGC 623
4 1,534,719 1,552,726 100 18,007 ATTAG 609
4 1,567,363 1,594,101 491 26,738 ATAC (603, 623)
5 192,764 204,730 165 11,966 TTTTG 623
6 191,008 210,165 242 19,157 ATGA (623, 242)
6 420,117 467,482 491 47,365 TGGAA (263 (623), 623 (495))
6 771,418 802,180 491 30,762 GGATG/GGCCG 623 (x3)
6 2,542,200 2,570,636 100 28,436 CATTG (623 (495))
7 1,261,818 1,284,705 633 22,887 GAGCT 495
7 1,787,729 1,808,698 165 20,969 GCATC 495
7 1,821,242 1,835,308 603 14,066 GCATA/G 623
7 2,535,616 2,549,001 242 13,385 ATATC 623
9 64,037 77,995 49 13,958 GATAG 623
9 79,932 109,217 603 29,285 CATTGG 623
9 962,581 977,124 49 14,543 CCAAT 1008
9 1,052,214 1,078,572 242 26,358 TATGA (49 (263 (623)))
10 863,891 879,094 633 15,203 GCTGC 242
10 1,306,971 1,330,127 165 23,156 AGATA (623 (623), 623)
12 609,353 623,337 940 13,984 GCTTC 49
13 1,028,648 1,051,790 100 23,142 G/CAAAG 495
14 411,612 433,895 603 22,283 TTAAG 495
14 587,485 599,441 165 11,956 CGGTT 623
15 192,089 204,601 242 12,512 GCTTT 623
16 510,094 526,146 15 16,052 TTCT 263
18 294,431 312,546 242 18,115 GAAGA (623, 623)
  1. Columns: Chr, Chromosome. §The brackets represent the level on nesting.