Table 1 Genes from developmental signaling pathways
From: The genetics of colony form and function in Caribbean Acropora corals
Signaling pathway | Gene family | Reference | Dataset | Pos. | Both | Int. | Trend |
|---|---|---|---|---|---|---|---|
Wnt | Wnt proteins | 13 (27) | 10 (17) | 8 | - | - | Up tips |
Frizzled | 8 (16) | 8 (12) | - | 1 | - | Up A. palm tips | |
Fzd-related | 2 (4) | 2 (4) | 1 | - | - | Up tips | |
LRP | 9 (45) | 8 (25) | 1 | - | 1 | Up A. cerv tips | |
Kremen | 1 | 1 | 1 | - | - | Up tips | |
Dkk3 | 1 (6) | 1 (6) | 4 | - | - | Up tips | |
Sox9 | 1 (2) | 1 (2) | - | 1 | - | Up A. palm tips | |
Ror2 | 1 (3) | 1 (3) | - | - | - | - | |
Axin | 1 | 1 | - | - | - | - | |
ß-catenin | 1 | 1 | - | - | - | - | |
GSK-3ß | 1 (2) | 1 (2) | - | - | - | - | |
Dishevelled | 1 | 1 | - | - | - | - | |
Sprouty | 2 (3) | 2 (3) | - | - | - | - | |
Wnt inhibitory factor | 1 (2) | 1 | - | - | - | - | |
Notch | Notch | 5 (53) | 5 (23) | 5 | 1 | - | Up A. cerv tips |
Delta/Delta-like | 6 (10) | 2 (3) | - | - | - | - | |
Jagged | 4 (8) | 3 (4) | - | - | - | - | |
Hairy/enhancer of split | 1 (3) | 1 (3) | - | - | - | - | |
E3 ubiquitin ligase MIB | 2 (18) | 2 (14) | 1 | - | - | Up bases | |
Suppressor of hairless | 2 (2) | 2 (2) | - | - | - | - | |
Numb | 1 | 1 | - | - | - | - | |
BMP | BMP | 7 (15) | 4 (10) | 1 | - | - | Up bases |
BMP receptor | 2 (2) | 2 (2) | - | - | - | - | |
Chordin/chordin-like/kielin | 3 (9) | 3 (9) | 1 | - | - | Up bases |