Typing locus | Original Sanger derived allele | Illumina derived allele | Retested Sanger derived allele | Number of bases, likely cause of discrepancy |
---|---|---|---|---|
MLST | Â | Â | Â | Â |
f adk | 1 | 10 | 10 | 9, mislabelled |
f gdh | 8 | 34 | 34 | 1, editing error |
f pdhC | 1 | 547 | 547 | 1, editing error |
 | 14 | 60 | 60 | 1, editing error |
eMLST | Â | Â | Â | Â |
f pykA | 9 | 5 | 5 | 35, mislabelled |
f ppk | 3 | 17 | 17 | 2, editing error |
 | 12 | 1 | 1 | 19, mislabelled |
f pip | 2 | 1 | 1 | 6, mislabelled |
 | 4 | 19 | 19 | 2, editing error |
f dhpS | 11 | 87 | 87 | 10, mislabelled |
 | 10 | 86 | 86 | 1, editing error |
 | 33 | 42 | 42 | 1, editing error |
f aspA | 8 | 78 | 78 | 6, mislabelled |
f gpm | 7 | 11 | 11 | 14, mislabelled |
f rpiA | 1 | 18 | 18 | 2, editing error |
f serC | 4 | 56 | 56 | 2, editing error |
 | 29 | 56 | 56 | 20, mislabelled |
 | 4 | 5 | 5 | 8, mislabelled |
 | 8 | 56 | 56 | 8, mislabelled |
f talA | 7 | 20 | 20 | 3, editing error |
 | 2 | 6 | 6 | 21, mislabelled |
Antigens | Â | Â | Â | Â |
PorA VR1 | 7 | 18-1 | 18-1 | 30, mislabelled |
PorA VR2 | 1-1 | 1-2 | 1-2 | 3, mislabelled |
 | 16 | 3 | 3 | 30, mislabelled |
 | 15 | 15-1 | 15-1 | 1, editing error |
 | 14-1 | 14 | 14 | 3, repeat sequence* |
fHpb | 25 | 5 | 5 | 198, mislabelled |
 | 39 | 16 | 16 | 5, mislabelled |
 | 24 | 14 | 14 | 196, mislabelled |
 | 5 | 22 | 22 | 5, mislabelled |
 | 35 | 32 | 32 | 51, mislabelled |