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Figure 2 | BMC Genomics

Figure 2

From: Automated genomic context analysis and experimental validation platform for discovery of prokaryote transcriptional regulator functions

Figure 2

Graphic user interface for Function Discovery V1.0. The TR list represents the ten TRs used for validation of this approach: bxe:Bxe_B1590 (BetI), bxe:Bxe_A2107 (CatR), bxe:Bxe_A3550 (CymR), bxe:Bxe_A2466 (CysB), bxe:Bxe_A0643 (GlpR), bxe:Bxe_B2027 (HpaR), bxe:Bxe_A2946 (HutC), bxe:Bxe_A0736 (KynR), bxe:Bxe_B2851 (ModE) and bxe:Bxe_A2142 (RcoM). The parameters used were: “# of similar genes”, 100 (nearest homologs) “# of nearby genes”, 10 (meaning 10 genes upstream and 10 genes downstream); “aa identity cutoff”, 40%.

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BMC Genomics

ISSN: 1471-2164

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