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Table 1 The REPA G tracts among vertebrates

From: Evolutionarily emerged G tracts between the polypyrimidine tract and 3′ AG are splicing silencers enriched in genes involved in cancer

# Gene symbol Transcript ID Exon rank Exon size (bp) 3′SS -15 ~ -1 nt Presence (1) or Absence (0) of REPA G tract
Other mammals Marsupials Birds Reptiles Fish
1 CAMK1 ENST00000256460 9 79 gtcttgggggtttag 1 1 0 0 0
2 CNOT3 ENST00000358389 3 276 gttctgtgggggcag 1 1 0 0 0
3 DUSP12 ENST00000367943 5 187 gtttgggggttgcag 1 1 0 0 0
4 FES ENST00000328850 6 138 ccgtctcgggggcag 1 1 0 0 0
5 TRPV1 ENST00000174621 7 180 gctccccgggggcag 1 0 0 0 0
6 SLC44A2 ENST00000380614 22 104 ccggggggagcccag 1 1 0 0 0
7 RQCD1 ENST00000273064 7 92 ttttgggggaaacag 1 1 0 0 0
8 PFN2 ENST00000239940 2 193 tttggtggggggcag 1 0 0 0 0
9 PDZK1 ENST00000339729 6 197 gttgggggagggtag 1 1 0 0 0
10 LRRC23 ENST00000007969 6 137 gccctgggggtctag 1 0 0 0 0
11 LAMB1 ENST00000222399 22 225 tttatcgggtgacag 1 0 0 0 0
12 C3orf62 ENST00000343010 2 92 acctgggggctgcag 1 1 0 0 0
13 PRMT5 ENST00000324366 3 86 ggtgggggagtgcag 1 1 0 0 0
14 PAOX ENST00000368534 2 159 tgtttgcgggggaag 1 1 1 1 1
15 METTL13 ENST00000367736 2 176 cctgggcgggggcag 1 1 1 1  
16 MICA ENST00000364810 4 288 gctgggtgggggcag 1 1 0 ND ND
17 FAM113 ENST00000309144 4 239 ggggggggtgggtag 1 1 ND 0 0
18 PAX8 ENST00000263334 5 176 cccggggggtaccag 1 1 ND 0 0
19 ABCC11 ENST00000356608 2 117 ttctgggaaacgaag 1 0 ND 0 0
20 HLA-G ENST00000383504 3 276 aaggggtggggccag 1 1 ND ND ND
21 HLA-H ENST00000360432 3 276 cgggggcggggccag 1 1 ND ND ND
  1. ND: not determined.