Table 1 Alternative splicing in MbIGYP genes
Gene ID | AS type* | AS position | 0 dpi | 1 dpi | 4 dpi | Mature protein size | Splicing manner |
|---|---|---|---|---|---|---|---|
Isoform1 reads/Isoform2 reads | Isoform1 reads/Isoform2 reads | Isoform1 reads/Isoform2 reads | Isoform1/Isoform2 | Isoform1/Isoform2 | |||
MbIGYP101 | A3′SS | First intron | 4/1 | 1/3 | 1742/2730 | 37 Aa/198 Aa | GT-AG/GT-AG |
MbIGYP23 | A3′SS | First intron | 20/10659 | 29497/79306 | 6932/24700 | 12 Aa/169 Aa | GT-AG/GT-AG |
MbIGYP29 | A5′SS and A3′SS and SE | First intron and second intron | 0/36189 | 195/110363 | 83/46546 | 153 Aa/186 Aa | CT-AC/GT-AG |
MbIGYP39 | A5′SS and A3′SS | First intron and second intron | 0/142719 0/355 | 351/36850 136/141 | 9626/177704 54/764 | 20 Aa/190 Aa | CT-AC/GT-AG |
MbIGYP53 | A3′SS | First intron | 0/1 | 0/7174 | 1279/6690 | 42 Aa/39 Aa | GT-AT/GT-AG |
MbIGYP62 | A5′SS | First intron | 1/75 | 4/3 | 1972/4251 | 19 Aa/223 Aa | GT-AG/GT-AG |
MbIGYP32 | A5′SS and A3′SS | Second intron | 0/0 | 0/0 | 28/69 | 32 Aa/203 Aa | GC-AC/GT-AG |
MbIGYP36 | A5′SS | First intron | 2/15 | 0/460 | 96/2183 | 37 Aa/198 Aa | GT-AG/GT-AG |
MbIGYP56 | A3′SS | Second intron | 0/74 | 0/1079 | 31/726 | 57 Aa/195 Aa | GT-AG/GT-AG |