Global small RNA analysis in fast-growing Arabidopsis thaliana with elevated concentrations of ATP and sugars

BMC Genomics

Table 1 Microarray data of genes involved in miRNA and siRNA biogenesis in WT, pap2 , OE7 and OE21

Gene	WT	*pap2*	OE7	OE21	OE7 FC	OE21 FC	P OE7	P OE21	Primary gene symbol
AT1G48410	9057	9424	10052	10717	111%	119%	0.322	0.057	Argonaute 1 (AGO1)
AT2G27880	225	218	415	354	183%	154%	0.037	0.048	Argonaute 5 (AGO5)*
AT1G69440	1073	853	2149	2357	200%	219%	0.002	0.000	Argonaute 7 (AGO7)*
AT5G44200	3599	3013	4053	4057	113%	113%	0.234	0.299	CPB20
AT2G13540	6824	6887	6310	6274	92%	92%	0.415	0.440	CPB80
AT1G01040	1543	1308	2319	2501	150%	162%	0.016	0.006	Dicer-like 1 (DCL1)*
AT3G43920	2701	2633	1984	2042	74%	75%	0.046	0.029	Dicer-like 3 (DCL3)*
AT4G20910	1308	1257	1139	1403	87%	107%	0.364	0.619	HEN1
AT1G09700	2576	2610	3368	3881	130%	150%	0.049	0.005	Hyponastic leaves 1 (HYL1)*
AT1G14790	1673	1576	2528	2874	149%	170%	0.052	0.009	RNA-dependent rna polymerase 1 (RDR1)*
AT5G23570	2079	2333	5530	6674	265%	322%	0.011	0.000	Suppressor of gene silencing 3 (SGS3)*
AT3G50100	1588	1368	446	647	28%	41%	0.004	0.000	Small RNA degrading nuclease 1 (SDN1)*

*Significantly (p < 0.05) changed in both OE lines. FC: Fold change.
The following genes were not significantly (p > 0.05) different between the WT and OE lines:
AGO2, AGO4, AGO6, DCL2, DCL4, HEN 1, HEN2, HEN4, HASTY, NRPD1A, RDR2, RDR6 (SGS2), SDE3 and SDE5.

ISSN: 1471-2164