Table 2 Known miRNAs with significant changes between both OE lines and WT
miRNAs | Root (counts) | Leaf (counts) | Target gene family | ||||||
|---|---|---|---|---|---|---|---|---|---|
OE21 | OE7 | pap2 | WT | OE21 | OE7 | pap2 | WT | ||
Increase in abundance in OE vs WT | |||||||||
ath-miR158b | 4864 | 3394 | 305 | 409 | 3101 | 2382 | 858 | 494 | PPR(At1g64100) |
ath-miR172a,b | 1493 | 1204 | 649 | 1019 | 70458 | 54544 | 38556 | 21624 | Apetala 2-like transcription factors |
ath-miR172c | 39 | 46 | 28 | 54 | 1123 | 691 | 267 | 178 | Apetala 2-like transcription factors |
ath-miR173 | 4900 | 2619 | 2405 | 4614 | 43178 | 32463 | 19271 | 13142 | TAS1A, TAS1B, TAS1C, TAS2 |
ath-miR319a,b | 5 | 9 | 9 | 0 | 232 | 252 | 57 | 61 | TCP Transcription factor |
ath-miR397a | 39 | 71 | 7 | 14 | 449 | 590 | 99 | 114 | Laccase |
ath-miR780.1 | 0 | 0 | 5 | 7 | 597 | 376 | 0 | 67 | Cation/hydrogen exchanger |
ath-miR780.2 | 0 | 0 | 0 | 4 | 516 | 218 | 1 | 57 | Cation/hydrogen exchanger |
ath-miR835-3p | 5 | 0 | 0 | 1 | 103 | 77 | 16 | 16 | LYR family of Fe/S cluster biogenesis protein |
ath-miR839 | 410 | 271 | 8 | 20 | 364 | 392 | 32 | 40 | Unknown target |
ath-miR841 | 13 | 13 | 0 | 1 | 2161 | 1874 | 1176 | 632 | Unknown target |
ath-miR841b* | 40 | 35 | 14 | 19 | 4334 | 3674 | 1369 | 996 | Histone protein |
ath-miR842 | 1164 | 661 | 1293 | 1288 | 114 | 248 | 39 | 55 | Jacalin lectin |
ath-miR846 | 235 | 189 | 128 | 256 | 512 | 545 | 232 | 107 | Jacalin lectin |
ath-miR851-3p | 51 | 14 | 4 | 6 | 227 | 200 | 31 | 51 | Unknown target |
Decrease in abundance in OE vs WT | |||||||||
ath-miR157a,b,c | 19563 | 18016 | 21655 | 43815 | 935537 | 1004505 | 1408657 | 921290 | Squamosa-promoter binding protein-like |
ath-miR169h,k,m | 50 | 30 | 108 | 120 | 125 | 66 | 91 | 125 | HAP2-like transcription factors |
ath-miR169i,j,l,n | 279 | 140 | 570 | 611 | 344 | 180 | 305 | 490 | HAP2-like transcription factors |
ath-miR3440b-3p | 104 | 58 | 243 | 385 | 207 | 210 | 503 | 753 | Unknown function |
ath-miR391 | 223 | 135 | 609 | 373 | 17772 | 23755 | 80936 | 50073 | TAS3 |
ath-miR396a | 1124 | 613 | 1443 | 2513 | 4902 | 9371 | 8279 | 11425 | Growth Regulating Factor |
ath-miR397b | 0 | 0 | 35 | 62 | 2 | 1 | 381 | 297 | Laccase |
ath-miR773 | 17 | 10 | 176 | 336 | 26 | 16 | 252 | 474 | DNA(cytosine-5-)-methyltransferase |
ath-miR775 | 0 | 0 | 355 | 521 | 5 | 0 | 2876 | 2418 | Galactosyltransferase |
ath-miR822 | 1026 | 1437 | 2301 | 3882 | 7423 | 6893 | 6903 | 4528 | Cysteine/Histidine-rich C1 domain family protein |
ath-miR833-5p | 0 | 0 | 21 | 13 | 0 | 0 | 171 | 119 | Unknown target |
ath-miR843 | 1 | 1 | 0 | 1 | 149 | 119 | 803 | 1136 | F-box family protein |
ath-miR848 | 10 | 7 | 567 | 518 | 12 | 15 | 732 | 617 | Unknown target |
ath-miR857 | 0 | 0 | 6 | 5 | 8 | 7 | 262 | 195 | Laccase |