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Table 2 Known miRNAs with significant changes between both OE lines and WT

From: Global small RNA analysis in fast-growing Arabidopsis thaliana with elevated concentrations of ATP and sugars

miRNAs Root (counts) Leaf (counts) Target gene family
OE21 OE7 pap2 WT OE21 OE7 pap2 WT
Increase in abundance in OE vs WT
ath-miR158b 4864 3394 305 409 3101 2382 858 494 PPR(At1g64100)
ath-miR172a,b 1493 1204 649 1019 70458 54544 38556 21624 Apetala 2-like transcription factors
ath-miR172c 39 46 28 54 1123 691 267 178 Apetala 2-like transcription factors
ath-miR173 4900 2619 2405 4614 43178 32463 19271 13142 TAS1A, TAS1B, TAS1C, TAS2
ath-miR319a,b 5 9 9 0 232 252 57 61 TCP Transcription factor
ath-miR397a 39 71 7 14 449 590 99 114 Laccase
ath-miR780.1 0 0 5 7 597 376 0 67 Cation/hydrogen exchanger
ath-miR780.2 0 0 0 4 516 218 1 57 Cation/hydrogen exchanger
ath-miR835-3p 5 0 0 1 103 77 16 16 LYR family of Fe/S cluster biogenesis protein
ath-miR839 410 271 8 20 364 392 32 40 Unknown target
ath-miR841 13 13 0 1 2161 1874 1176 632 Unknown target
ath-miR841b* 40 35 14 19 4334 3674 1369 996 Histone protein
ath-miR842 1164 661 1293 1288 114 248 39 55 Jacalin lectin
ath-miR846 235 189 128 256 512 545 232 107 Jacalin lectin
ath-miR851-3p 51 14 4 6 227 200 31 51 Unknown target
Decrease in abundance in OE vs WT
ath-miR157a,b,c 19563 18016 21655 43815 935537 1004505 1408657 921290 Squamosa-promoter binding protein-like
ath-miR169h,k,m 50 30 108 120 125 66 91 125 HAP2-like transcription factors
ath-miR169i,j,l,n 279 140 570 611 344 180 305 490 HAP2-like transcription factors
ath-miR3440b-3p 104 58 243 385 207 210 503 753 Unknown function
ath-miR391 223 135 609 373 17772 23755 80936 50073 TAS3
ath-miR396a 1124 613 1443 2513 4902 9371 8279 11425 Growth Regulating Factor
ath-miR397b 0 0 35 62 2 1 381 297 Laccase
ath-miR773 17 10 176 336 26 16 252 474 DNA(cytosine-5-)-methyltransferase
ath-miR775 0 0 355 521 5 0 2876 2418 Galactosyltransferase
ath-miR822 1026 1437 2301 3882 7423 6893 6903 4528 Cysteine/Histidine-rich C1 domain family protein
ath-miR833-5p 0 0 21 13 0 0 171 119 Unknown target
ath-miR843 1 1 0 1 149 119 803 1136 F-box family protein
ath-miR848 10 7 567 518 12 15 732 617 Unknown target
ath-miR857 0 0 6 5 8 7 262 195 Laccase
  1. Numbers in bold mean significant changes in OE versus WT, p-value <0.05 and fold change log2 (OE/WT) >1 or fold change log2 (OE/WT) < -1. All reads were normalized. The reads cut off was 100. All the targets were predicted from website of Mayer’s lab (http://mpss.udel.edu/at_sRNA/index.php?menu = https://wasabi.dbi.udel.edu/~apps/tp/index.php?SITE=at_sRNA).