Table 5 Candidate genes in the soil-assorting genomic regions
From: The ecological genomic basis of salinity adaptation in Tunisian Medicago truncatula
LD block | M. truncatulagene ID | Annotation†|
|---|---|---|
2.1 | Medtr2g025710.1 | Wax biosynthesis; Long-chain-alcohol O-fatty-acyltransferase (Mboat) |
3.1 | Medtr3g071700.1 | Chromatin remodeling; Probable helicase |
3.1 | Medtr3g071580.1 | Phytase; Multiple inositol polyphosphate phosphatase |
3.1 | Medtr3g071310.1 | Protein-protein interaction; Similar to human prot LOC63920 and ZMYM1 |
3.1 | Medtr3g070980.1 | Protein turnover; Aspartic proteinase Asp1 (Pepsin A) |
3.1 | Medtr3g071510.1 | Redox regulation; ROS balance; Glutaredoxin |
3.1 | Medtr3g071480.1 | Signaling; Leucine-rich repeat receptor kinase |
3.1 | Medtr3g071150.1 | Vesicle transport; Coatomer subunit beta remote homolog |
3.2 | Medtr3g098120.1, Medtr3g098140.1 | probable FA metabolism; Acyl-coenzyme A thioesterase |
3.2 | Medtr3g098090.1 | Abiotic Stress; Signaling; CPK: Calcium-dependent protein kinase |
4.2 | Medtr4g128870.1 | Abiotic Stress; Carbon metabolism; Trehalose-phosphatase |
4.2 | Medtr4g128840.1 | Carbon metabolism; Xylose isomerase |
4.2 | Medtr4g128770.1 | Biotic stress; Disease resistance; Putative pathogenesis-related protein PR-1-like |
4.2 | Medtr4g128820.1 | Abiotic Stress; Signaling; CIPK Calcium/calmodulin-dependent protein kinase type II |
4.2 | Medtr4g128930.1 | Flowering; Signaling; Constans |
4.2 | Medtr4g128990.1 | Signaling; Serine/threonin kinase-like |
5.2 | Medtr5g013020.1 | Protein membrane localization; Palmitoyl-protein thioesterase 1 precursor |
5.3 | Medtr5g014910.1 | Protein synthesis; Arginyl-tRNA synthetase |
5.4 | Medtr5g021390.1 | Biotic stress/Development; Lignification; Ferulate 5-hydroxylase |
6 | Medtr6g047210.1 | Biotic stress; Disease resistance; NB-LRR protein |
7.1 | Medtr7g022980.1 | Signaling; Zinc finger protein 6 |
7.2 | Medtr7g085120.1 | N-fixation; Nucleotide diphosphatase; Apyrase |
7.2 | Medtr7g084910.1, Medtr7g084940.1 | Biotic stress; Phytoalexin biosynthesis; O-acetyltransferase (Flavonoid synthesis) |
8.1 | Medtr8g008530.1 | Electron carrier; Cytochrome P450 (related) |
8.1 | Medtr8g008500.1, Medtr8g008510.1, Medtr8g008660.1 | Biotic/Abiotic Stress; Me-hormone metabolism; Alpha/beta hydrolase Methylesterase |
8.1 | Medtr8g008640.1 | Protein folding; peptidyl-prolyl isomerases (PPIases) |
8.1 | Medtr8g008680.1 | Protein synthesis; Initiation factor eIF-4 gamma like |