Skip to main content

Table 5 Candidate genes in the soil-assorting genomic regions

From: The ecological genomic basis of salinity adaptation in Tunisian Medicago truncatula

LD block M. truncatulagene ID Annotation
2.1 Medtr2g025710.1 Wax biosynthesis; Long-chain-alcohol O-fatty-acyltransferase (Mboat)
3.1 Medtr3g071700.1 Chromatin remodeling; Probable helicase
3.1 Medtr3g071580.1 Phytase; Multiple inositol polyphosphate phosphatase
3.1 Medtr3g071310.1 Protein-protein interaction; Similar to human prot LOC63920 and ZMYM1
3.1 Medtr3g070980.1 Protein turnover; Aspartic proteinase Asp1 (Pepsin A)
3.1 Medtr3g071510.1 Redox regulation; ROS balance; Glutaredoxin
3.1 Medtr3g071480.1 Signaling; Leucine-rich repeat receptor kinase
3.1 Medtr3g071150.1 Vesicle transport; Coatomer subunit beta remote homolog
3.2 Medtr3g098120.1, Medtr3g098140.1 probable FA metabolism; Acyl-coenzyme A thioesterase
3.2 Medtr3g098090.1 Abiotic Stress; Signaling; CPK: Calcium-dependent protein kinase
4.2 Medtr4g128870.1 Abiotic Stress; Carbon metabolism; Trehalose-phosphatase
4.2 Medtr4g128840.1 Carbon metabolism; Xylose isomerase
4.2 Medtr4g128770.1 Biotic stress; Disease resistance; Putative pathogenesis-related protein PR-1-like
4.2 Medtr4g128820.1 Abiotic Stress; Signaling; CIPK Calcium/calmodulin-dependent protein kinase type II
4.2 Medtr4g128930.1 Flowering; Signaling; Constans
4.2 Medtr4g128990.1 Signaling; Serine/threonin kinase-like
5.2 Medtr5g013020.1 Protein membrane localization; Palmitoyl-protein thioesterase 1 precursor
5.3 Medtr5g014910.1 Protein synthesis; Arginyl-tRNA synthetase
5.4 Medtr5g021390.1 Biotic stress/Development; Lignification; Ferulate 5-hydroxylase
6 Medtr6g047210.1 Biotic stress; Disease resistance; NB-LRR protein
7.1 Medtr7g022980.1 Signaling; Zinc finger protein 6
7.2 Medtr7g085120.1 N-fixation; Nucleotide diphosphatase; Apyrase
7.2 Medtr7g084910.1, Medtr7g084940.1 Biotic stress; Phytoalexin biosynthesis; O-acetyltransferase (Flavonoid synthesis)
8.1 Medtr8g008530.1 Electron carrier; Cytochrome P450 (related)
8.1 Medtr8g008500.1, Medtr8g008510.1, Medtr8g008660.1 Biotic/Abiotic Stress; Me-hormone metabolism; Alpha/beta hydrolase Methylesterase
8.1 Medtr8g008640.1 Protein folding; peptidyl-prolyl isomerases (PPIases)
8.1 Medtr8g008680.1 Protein synthesis; Initiation factor eIF-4 gamma like
  1. Genes with non-synonymous mutations in conserved amino acids that assort with soil type. Not included are 5 unknown proteins and 21 hypothetical proteins. Expanded information in Additional files 12, 13, 14, 15 and 16. Biological Process, Biochemical function, Protein annotation.