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Table 3 Concordance of genome-wide association analyses for the California calves with the loci most strongly associated with BRDC susceptibility for all analyses

From: Susceptibility loci revealed for bovine respiratory disease complex in pre-weaned holstein calves

Chromosome (location Mb) EMMAX-GRM+ GBLUP+ FvR+ EIGENSTRAT+ No. SNPs^ Lead SNP# Score*
BTA15 (30–31) 1 1 1 30 18 rs41756356 33
BTA14 (63–64) 14 7 15 6 34 rs134331138 42
BTA3 (119–120) 65 9 7 5 11 rs41660991 86
BTA23 (3–4) 5 2 76 115 5 rs110158528 198
BTA15 (14–15) 156 67 19 3 1 rs136365736 245
BTA19 (9–10) 73 170 37 44 1 rs121919115 324
BTA6 (42–43) 79 21 171 65 12 rs43456007 336
BTA4 (47–48) 74 19 192 63 1 rs41651168 348
BTA14 (11–12) 147 64 3 178 2 rs133522438 392
BTA6 (40–41) 131 72 172 32 12 rs134070398 412
BTA13 (71–72) 45 187 34 155 7 rs110991341 421
BTA7 (10–11) 97 274 135 41 6 rs134195407 547
BTA18 (0–1) 35 313 198 72 32 rs109385868 618
BTA3 (46–47) 178 364 178 31 2 rs133069708 678
BTA2 (45–46) 143 29 287 227 1 rs136772856 686
BTA11 (71–72) 304 375 51 48 1 rs133739594 778
BTA12 (6–7) 76 84 418 210 1 rs135134119 789
BTA3 (107–108) 294 315 98 110 1 rs137396132 817
BTA12 (33–34) 306 176 355 34 1 rs133730139 871
BTA16 (36–37) 125 140 112 529 13 rs136788834 906
BTA6 (95–96) 191 35 82 652 2 rs41911495 960
  1. +Reflects the ranking of the best (lowest) ranked SNP for that genomic region for that analysis. Only scores <1000 are shown.
  2. ^Number of SNPs ranked among the top 200 SNPs (top 0.03%) that are found within this genomic region as being associated with BRDC susceptibility across the different analyses.
  3. #The rs SNP identification number for the SNP with the lowest ranking for the QTL.
  4. *Score is the sum of the ranks for the best ranked SNP for that genomic region across all analyses.