Table 3 Concordance of genome-wide association analyses for the California calves with the loci most strongly associated with BRDC susceptibility for all analyses
From: Susceptibility loci revealed for bovine respiratory disease complex in pre-weaned holstein calves
Chromosome (location Mb) | EMMAX-GRM+ | GBLUP+ | FvR+ | EIGENSTRAT+ | No. SNPs^ | Lead SNP# | Score* |
|---|---|---|---|---|---|---|---|
BTA15 (30–31) | 1 | 1 | 1 | 30 | 18 | rs41756356 | 33 |
BTA14 (63–64) | 14 | 7 | 15 | 6 | 34 | rs134331138 | 42 |
BTA3 (119–120) | 65 | 9 | 7 | 5 | 11 | rs41660991 | 86 |
BTA23 (3–4) | 5 | 2 | 76 | 115 | 5 | rs110158528 | 198 |
BTA15 (14–15) | 156 | 67 | 19 | 3 | 1 | rs136365736 | 245 |
BTA19 (9–10) | 73 | 170 | 37 | 44 | 1 | rs121919115 | 324 |
BTA6 (42–43) | 79 | 21 | 171 | 65 | 12 | rs43456007 | 336 |
BTA4 (47–48) | 74 | 19 | 192 | 63 | 1 | rs41651168 | 348 |
BTA14 (11–12) | 147 | 64 | 3 | 178 | 2 | rs133522438 | 392 |
BTA6 (40–41) | 131 | 72 | 172 | 32 | 12 | rs134070398 | 412 |
BTA13 (71–72) | 45 | 187 | 34 | 155 | 7 | rs110991341 | 421 |
BTA7 (10–11) | 97 | 274 | 135 | 41 | 6 | rs134195407 | 547 |
BTA18 (0–1) | 35 | 313 | 198 | 72 | 32 | rs109385868 | 618 |
BTA3 (46–47) | 178 | 364 | 178 | 31 | 2 | rs133069708 | 678 |
BTA2 (45–46) | 143 | 29 | 287 | 227 | 1 | rs136772856 | 686 |
BTA11 (71–72) | 304 | 375 | 51 | 48 | 1 | rs133739594 | 778 |
BTA12 (6–7) | 76 | 84 | 418 | 210 | 1 | rs135134119 | 789 |
BTA3 (107–108) | 294 | 315 | 98 | 110 | 1 | rs137396132 | 817 |
BTA12 (33–34) | 306 | 176 | 355 | 34 | 1 | rs133730139 | 871 |
BTA16 (36–37) | 125 | 140 | 112 | 529 | 13 | rs136788834 | 906 |
BTA6 (95–96) | 191 | 35 | 82 | 652 | 2 | rs41911495 | 960 |