Table 5 Concordance of genome-wide association analyses for the combined California and New Mexico calves with the loci most strongly associated with BRDC susceptibility for all analyses
From: Susceptibility loci revealed for bovine respiratory disease complex in pre-weaned holstein calves
Chromosome (location Mb) | EMMAX-GRM+ | GBLUP+ | FvR+ | EIGENSTRAT+ | No. SNPs^ | Lead SNP# | Score* |
|---|---|---|---|---|---|---|---|
BTA15 (30–31) | 1 | 1 | 2 | 11 | 16 | rs41756356 | 15 |
BTA19 (9–10) | 40 | 188 | 20 | 1 | 1 | rs121919115 | 249 |
BTA15 (31–32) | 33 | 2 | 299 | 25 | 1 | rs109057462 | 359 |
BTA11 (80–81) | 123 | 103 | 71 | 64 | 9 | rs133204524 | 361 |
BTA20 (0–1) | 30 | 20 | 9 | 315 | 13 | rs110484875 | 374 |
BTA3 (46–47) | 55 | 192 | 91 | 81 | 2 | rs133069708 | 419 |
BTA4 (47–48) | 4 | 36 | 358 | 34 | 18 | rs136678678 | 432 |
BTA17 (16–17) | 26 | 3 | 49 | 397 | 3 | rs135082107 | 477 |
BTA3(119–121) | 41 | 339 | 118 | 82 | 3 | rs110977672 | 580 |
BTA14 (11–12) | 142 | 59 | 63 | 319 | 2 | rs133522438 | 583 |
BTA17 (14–15) | 80 | 135 | 26 | 391 | 20 | rs110488418 | 632 |
BTA29 (48–49) | 94 | 171 | 198 | 197 | 1 | rs136036800 | 660 |
BTA4 (48–49) | 21 | 209 | 455 | 3 | 7 | rs110213301 | 688 |
BTA20 (0–1) | 143 | 251 | 170 | 144 | 5 | rs110513803 | 708 |
BTA16 (36–37) | 162 | 280 | 224 | 92 | 14 | rs136059947 | 758 |
BTA15 (14–15) | 182 | 110 | 125 | 354 | 2 | rs136365736 | 771 |
BTA3 (89–90) | 342 | 146 | 138 | 147 | 2 | rs136571247 | 773 |
BTA14 (81–82) | 227 | 371 | 133 | 63 | 6 | rs132956286 | 794 |
BTA18 (55–56) | 107 | 26 | 647 | 26 | 1 | rs136121374 | 806 |
BTA12 (58–59) | 137 | 21 | 593 | 86 | 2 | rs135900256 | 837 |
BTA7 (11–12) | 297 | 207 | 4 | 378 | 1 | rs134912653 | 886 |
BTA10 (1–2) | 284 | 133 | 249 | 267 | 1 | rs136001993 | 933 |
BTA17 (10–11) | 105 | 480 | 100 | 260 | 2 | rs136672854 | 945 |
BTA14 (62–63) | 277 | 613 | 44 | 12 | 1 | rs136594328 | 946 |
BTA20 (23–24) | 60 | 202 | 461 | 254 | 9 | rs109301681 | 977 |