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Table 5 Concordance of genome-wide association analyses for the combined California and New Mexico calves with the loci most strongly associated with BRDC susceptibility for all analyses

From: Susceptibility loci revealed for bovine respiratory disease complex in pre-weaned holstein calves

Chromosome (location Mb) EMMAX-GRM+ GBLUP+ FvR+ EIGENSTRAT+ No. SNPs^ Lead SNP# Score*
BTA15 (30–31) 1 1 2 11 16 rs41756356 15
BTA19 (9–10) 40 188 20 1 1 rs121919115 249
BTA15 (31–32) 33 2 299 25 1 rs109057462 359
BTA11 (80–81) 123 103 71 64 9 rs133204524 361
BTA20 (0–1) 30 20 9 315 13 rs110484875 374
BTA3 (46–47) 55 192 91 81 2 rs133069708 419
BTA4 (47–48) 4 36 358 34 18 rs136678678 432
BTA17 (16–17) 26 3 49 397 3 rs135082107 477
BTA3(119–121) 41 339 118 82 3 rs110977672 580
BTA14 (11–12) 142 59 63 319 2 rs133522438 583
BTA17 (14–15) 80 135 26 391 20 rs110488418 632
BTA29 (48–49) 94 171 198 197 1 rs136036800 660
BTA4 (48–49) 21 209 455 3 7 rs110213301 688
BTA20 (0–1) 143 251 170 144 5 rs110513803 708
BTA16 (36–37) 162 280 224 92 14 rs136059947 758
BTA15 (14–15) 182 110 125 354 2 rs136365736 771
BTA3 (89–90) 342 146 138 147 2 rs136571247 773
BTA14 (81–82) 227 371 133 63 6 rs132956286 794
BTA18 (55–56) 107 26 647 26 1 rs136121374 806
BTA12 (58–59) 137 21 593 86 2 rs135900256 837
BTA7 (11–12) 297 207 4 378 1 rs134912653 886
BTA10 (1–2) 284 133 249 267 1 rs136001993 933
BTA17 (10–11) 105 480 100 260 2 rs136672854 945
BTA14 (62–63) 277 613 44 12 1 rs136594328 946
BTA20 (23–24) 60 202 461 254 9 rs109301681 977
  1. +Reflects the ranking of the best (lowest) ranking SNP for that genomic region for that analysis. Only scores <1000 are shown.
  2. ^Number of SNPs ranked in the top 200 SNPs (top 0.03%) that are found in this genomic region as associated with BRDC susceptibility across the different analyses.
  3. #The rs SNP identification number for the SNP with the lowest ranking for the QTL.
  4. *Score is the sum of the ranking of the best ranking SNP for that genomic region across all analyses.