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Table 4 Alignment statistics of the NPC data

From: Are special read alignment strategies necessary and cost-effective when handling sequencing reads from patient-derived tumor xenografts?

Mapping strategy

Reference

Mapped reads

Unmapped reads

C666-1

   

Direct

hg19

2,399,396,153

111,814,507

 

mm10*

6,121,700

2,505,088,960

Filtering

hg19**

2,392,763,986

111,689,642

Combined

hg19

2,340,660,573

170,203,874

 

mm10

346,213

 

C15

   

Direct

hg19

1,786,870,566

768,689,454

 

mm10*

681,133,817

1,874,426,203

Filtering

hg19**

1,768,136,467

85,616,069

Combined

hg19

1,784,069,633

95,357,988

 

mm10

676,132,399

  1. *For comparison, we also aligned all reads to the mouse reference.
  2. **These are the numbers of reads aligned to the human reference after discarding those aligned to the mouse reference.