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Table 2 List of all transcript initiation sites for the 3 genes in mouse (A) and human (B) samples with their shapes and association with TATA-box and CpG islands

From: CAGE-defined promoter regions of the genes implicated in Rett Syndrome

A Mouse promoters
Promoter TATA CpG Shape
pA@Foxg1 TATA-less CpG Broad
pB@Foxg1 TATA-less CpG-less Broad
p1@Foxg1 TATA-less CpG-less Sharp
p2@Foxg1 TATA-less CpG Broad
p3@Foxg1 TATA-less CpG Broad
p4@Foxg1 TATA-less CpG Broad
p1@Mecp2 TATA-less CpG Broad
p2@Mecp2 TATA-less CpG Broad
p1@Cdkl5 TATA-less CpG Broad
p2@Cdkl5 TATA-less CpG Sharp
B Human promoters
Promoter TATA CpG Shape
p1@FOXG1 TATA-less CpG Broad
p2@ FOXG1 TATA-less CpG-less Sharp
p3@ FOXG1 TATA-less CpG-less Sharp
p4@ FOXG1 TATA-less CpG Broad
p5@ FOXG1 TATA-less CpG-less Broad
p6 @FOXG1 TATA-less CpG-less Broad
p7@ FOXG1 TATA-less CpG Broad
p9@ FOXG1 TATA-less CpG-less Sharp
p1@MECP2 TATA-less CpG Broad
p2@ MECP2 TATA-less CpG Broad
p5@MECP2 TATA-less CpG-less Broad
p1@CDKL5 TATA-less CpG Broad
p2@CDKL5 TATA-less CpG Sharp
  1. Promoters were listed as TATA-less if a TATA-box was absent 500 bp upstream of the promoter. Similarly in the absence of a CpG island within 500 bp of the TSS, the promoter was classified as CpG-less.