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Table 3 Transcription factor binding sites analyses at the promoters of the three genes

From: CAGE-defined promoter regions of the genes implicated in Rett Syndrome

TF

p1@FOXG1

p2@FOXG1

p1@MECP2

p2@MECP2

p1@CDKL5

p2@CDKL5

RREB1

1.5 (p = 0.01)*

0.0 (p = 1.0)

0.0 (p = 1.0)

0.0 (p = 1.0)

0.7 (p = 0.08)

0.7 (p = 0.08)

FOXP1

1.3 (p = 0.03)*

0.7 (p = 0.1)

0.0 (p = 1.0)

0.0 (p = 1.0)

0.0 (p = 1.0)

0.0 (p = 1.0)

NFY

1.9 (p = 0.01)*

0.0 (p = 1.0)

1.3 (p = 0.02)*

1.9 (p = 0.01)*

0.9 (p = 0.09)

0.9 (p = 0.09)

TF

pA@Foxg1

pB@Foxg1

p1@Mecp2

p2@Mecp2

p1@Cdkl5

p2@Cdkl5

RREB1

0.0 (p = 1.0)

0.9 (p = 0.06)

0.0 (p = 1.0)

0.34 (p = 0.6)

0.0 (p = 1.0)

0.0 (p = 1.0)

FOXP1

0.0 (p = 1.0)

0.0 (p = 1.0)

0.0 (p = 1.0)

0.2 (p = 0.7)

0.0 (p = 1.0)

0.0 (p = 1.0)

NFY

1.9 (p = 0.007)*

1.9 (p = 0.007)*

1.3 (p = 0.02)*

1.3 (p = 0.02)*

1.0 (p = 0.03)*

1.0 (p = 0.03)*

SP1

1.7 (p = 0.04)*

1.4 (p = 0.06)

2.5 (p = 0.01)*

2.5 (p = 0.01)*

2.6 (p = 0.01)*

2.6 (p = 0.01)*

  1. *Denotes significant values.