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Table 4 Common, conserved Bacillus phage proteins of predicted function with at least 20 homologues

From: Erratum to: genomic comparison of 93 Bacillus phages reveals 12 clusters, 14 singletons and remarkable diversity

Pham # Domain/Function # Members # Phages Phages (cluster or phage name)
DNA REPLICATION/METABOLISM
236 DNA Polymerase I 41 26 I, J1, J2, J3, J4, J5, J6, J8, SP10, Bc431v3
274 Chromosome Seg. ATPase 38 25 H2, J, BanS-Tsamsa
247 Class I RNR 36 33 H, I1, J, 0305φ836, BCD7, SP10, BanS-Tsamsa, SPB2
261 Helicase 28 28 I, J, SP10
256 SbcC-like Nuclease 28 28 I, J, SP10
257 Endonuclease (SbcD) 27 27 I, J1, J2, J3, J4, J5, J6, J7, BPS10C, SP10, W.Ph., Hakuna, Megatron
101 Dihydrofolate Reductase 27 27 H2, J, BCD7, BanS-Tsamsa, G
98 Thymidylate Synthase 24 24 J, BCD7
99 dNMP Kinase 23 23 J
195 Fumerate Reductase 22 23 J
222 Mre11 Nuclease 23 23 J
232 DNA Polymerase III 23 23 J
238 Histone 23 23 J
252 DUT 23 23 J
258 Replicative DNA Helicase 23 23 J
229 RecA-like 23 23 J
254 DNA primase 23 23 J
246 RNR beta subunit 22 22 H1, I1, J4, J5, J6, J8, 0305phi8-36
33 Chromosome Seg. Protein 22 22 J1, J2, J4, J5, J6, J7, J8
244 Glutaredoxin-like 20 19 J1, J2, J4, J5, J6, J8, SPBc2, BPS10c, BPS13, Megatron, W.Ph
VIRION STRUCTURE AND ASSEMBLY
278 Tail Assembly Chaperone 46 23 J
89 Phage Terminase Large 34 28 I, J, SP10
264 Adsorption Tail 29 27 I, J1, J3, J4, J5, J6, J7, J8
291 MCP 29 28 I, J, SP10
276 Tail Lysin 29 28 I, J, SP10
295 Portal protein 28 28 I, J, SP10
266 Baseplate 28 28 I, J, SP10
283 Structural Protein 28 28 I, J, SP10
284 Tail Sheath 28 28 I, J, SP10
293 Prohead Protease 28 27 I, J2, J3, J4, J5, J6, J7, J8, phiNIT1, SP10
265 Baseplate J 27 23 J
273 Tail Lysin 27 24 J, BanS-Tsamsa
277 Major Capsid L1 Protein 24 24 J, SP10
88 Terminase 23 23 J
CELL LYSIS PROTEINS
276 Cell Wall Hydrolase 28 28 I, J, SP10
282 Murein Transglycosylase 28 28 I1, J, 0305φ8-36, SP10, BanS-Tsamsa
226 Holin 23 23 J
198 Holin 23 23 J
267 Lysozyme-like 23 23 J
GENE REGULATION/HOST FUNCTIONS
35 Bacterial SH3-like 25 25 C, E1, F, J5, J8, BanS-Tsamsa, PhiCM3
370 FtsK DNA Translocase 23 23 C, E1, G, BV1, PM1, phIS3501, phBC6A51
260 cAMP Regulatory Protein 23 23 J
269 MisL-like transporter 23 23 J
292 Membrane Protein 23 23 J
155 Metallo-beta-lactamase 21 20 J4, J5, J6, J7, J8, BanS-Tsamsa
  1. Abbreviations include deoxynucleotide monophosphate kinase (dNMP kinase), chromosome segregation adenosine triphosphatase (chromosome seg ATPase), ribonucleotide diphosphate reductase (RNR), deoxyuridine nucleotidylhydrolase (DUT), and major capsid protein (MCP). Gene products are given and are organized by basic function (DNA Replication/Metabolism, Virion Structure and Assembly, Cell Lysis Proteins or Gene Regulation/Host Functions).
  2. *Pham #’s are specific to this analysis due to assignment by Phamerator [34].