TY - JOUR AU - Min, H. T. AU - Sherman, L. A. PY - 2010 DA - 2010// TI - Genetic transformation and mutagenesis via single-stranded dna in the unicellular, diazotrophic cyanobacteria of the genus Cyanothece JO - Appl Environ Microbiol VL - 76 UR - https://doi.org/10.1128/AEM.01456-10 DO - 10.1128/AEM.01456-10 ID - Min2010 ER - TY - JOUR AU - Zhang, X. AU - Sherman, D. M. AU - Sherman, L. A. PY - 2014 DA - 2014// TI - The Uptake Hydrogenase in the Unicellular Diazotrophic Cyanobacterium Cyanothece sp. Strain PCC 7822 Protects Nitrogenase from Oxygen Toxicity JO - J Bacteriol VL - 196 UR - https://doi.org/10.1128/JB.01248-13 DO - 10.1128/JB.01248-13 ID - Zhang2014 ER - TY - BOOK AU - Bandyopadhyay, A. AU - Elvitigala, T. AU - Welsh, E. AU - Stockel, J. AU - Liberton, M. AU - Min, H. AU - Sherman, L. A. AU - Pakrasi, H. B. PY - 2011 DA - 2011// TI - Novel metabolic attributes of the genus Cyanothece, comprising a group of unicellular nitrogen-fixing Cyanothece ID - Bandyopadhyay2011 ER - TY - JOUR AU - Bandyopadhyay, A. AU - Stockel, J. AU - Min, H. AU - Sherman, L. A. AU - Pakrasi, H. B. PY - 2010 DA - 2010// TI - High rates of photobiological H2 production by a cyanobacterium under aerobic conditions JO - Nat Commun VL - 1 UR - https://doi.org/10.1038/ncomms1139 DO - 10.1038/ncomms1139 ID - Bandyopadhyay2010 ER - TY - JOUR AU - Elvitigala, T. AU - Stockel, J. AU - Ghosh, B. K. AU - Pakrasi, H. B. PY - 2009 DA - 2009// TI - Effect of continuous light on diurnal rhythms in Cyanothece sp. ATCC 51142 JO - BMC Genomics VL - 10 UR - https://doi.org/10.1186/1471-2164-10-226 DO - 10.1186/1471-2164-10-226 ID - Elvitigala2009 ER - TY - JOUR AU - Singh, A. K. AU - Elvitigala, T. AU - Cameron, J. C. AU - Ghosh, B. K. AU - Bhattacharyya-Pakrasi, M. AU - Pakrasi, H. B. PY - 2010 DA - 2010// TI - Integrative analysis of large scale expression profiles reveals core transcriptional response and coordination between multiple cellular processes in a cyanobacterium JO - BMC Syst Biol VL - 4 ID - Singh2010 ER - TY - JOUR AU - Stockel, J. AU - Welsh, E. A. AU - Liberton, M. AU - Kunnvakkam, R. AU - Aurora, R. AU - Pakrasi, H. B. PY - 2008 DA - 2008// TI - Global transcriptomic analysis of Cyanothece 51142 reveals robust diurnal oscillation of central metabolic processes JO - Proc Natl Acad Sci U S A VL - 105 UR - https://doi.org/10.1073/pnas.0711068105 DO - 10.1073/pnas.0711068105 ID - Stockel2008 ER - TY - JOUR AU - Toepel, J. AU - Welsh, E. AU - Summerfield, T. C. AU - Pakrasi, H. B. AU - Sherman, L. A. PY - 2008 DA - 2008// TI - Differential transcriptional analysis of the cyanobacterium Cyanothece sp. strain ATCC 51142 during light–dark and continuous-light growth JO - J Bacteriol VL - 190 UR - https://doi.org/10.1128/JB.00206-08 DO - 10.1128/JB.00206-08 ID - Toepel2008 ER - TY - JOUR AU - Min, H. AU - Sherman, L. A. PY - 2010 DA - 2010// TI - Hydrogen production by the unicellular, diazotrophic cyanobacterium Cyanothece sp. strain ATCC 51142 under conditions of continuous light JO - Appl Environ Microbiol VL - 76 UR - https://doi.org/10.1128/AEM.00146-10 DO - 10.1128/AEM.00146-10 ID - Min2010 ER - TY - JOUR AU - Aryal, U. K. AU - Stockel, J. AU - Krovvidi, R. K. AU - Gritsenko, M. A. AU - Monroe, M. E. AU - Moore, R. J. AU - Koppenaal, D. W. AU - Smith, R. D. AU - Pakrasi, H. B. AU - Jacobs, J. M. PY - 2011 DA - 2011// TI - Dynamic proteomic profiling of a unicellular cyanobacterium Cyanothece ATCC51142 across light–dark diurnal cycles JO - BMC Syst Biol VL - 5 UR - https://doi.org/10.1186/1752-0509-5-194 DO - 10.1186/1752-0509-5-194 ID - Aryal2011 ER - TY - JOUR AU - Aryal, U. K. AU - Stockel, J. AU - Welsh, E. A. AU - Gritsenko, M. A. AU - Nicora, C. D. AU - Koppenaal, D. W. AU - Smith, R. D. AU - Pakrasi, H. B. AU - Jacobs, J. M. PY - 2012 DA - 2012// TI - Dynamic proteome analysis of Cyanothece sp. ATCC 51142 under constant light JO - J Proteome Res VL - 11 UR - https://doi.org/10.1021/pr200959x DO - 10.1021/pr200959x ID - Aryal2012 ER - TY - JOUR AU - Stockel, J. AU - Jacobs, J. M. AU - Elvitigala, T. R. AU - Liberton, M. AU - Welsh, E. A. AU - Polpitiya, A. D. AU - Gritsenko, M. A. AU - Nicora, C. D. AU - Koppenaal, D. W. AU - Smith, R. D. PY - 2011 DA - 2011// TI - Diurnal rhythms result in significant changes in the cellular protein complement in the cyanobacterium Cyanothece 51142 JO - PLoS ONE VL - 6 UR - https://doi.org/10.1371/journal.pone.0016680 DO - 10.1371/journal.pone.0016680 ID - Stockel2011 ER - TY - CHAP AU - Aryal, U. K. AU - Callister, S. J. AU - McMahon, B. H. AU - McCue, L. A. AU - Brown, J. AU - Stockel, J. AU - Liberton, M. AU - Mishra, S. AU - Zhang, X. AU - Nicora, C. D. PY - 2014 DA - 2014// TI - Proteomic screens of five strains of oxygenic photosynthetic cyanobacteria of the genus Cyanothece BT - J Proteome Res ID - Aryal2014 ER - TY - JOUR AU - Aryal, U. K. AU - Callister, S. J. AU - Mishra, S. AU - Zhang, X. H. AU - Shutthanandan, J. I. AU - Angel, T. E. AU - Shukla, A. K. AU - Monroe, M. E. AU - Moore, R. J. AU - Koppenaal, D. W. PY - 2013 DA - 2013// TI - Proteome analyses of strains ATCC 51142 and PCC 7822 of the Diazotrophic Cyanobacterium Cyanothece sp. under culture conditions resulting in enhanced H-2 production JO - Appl Environ Microbiol VL - 79 UR - https://doi.org/10.1128/AEM.02864-12 DO - 10.1128/AEM.02864-12 ID - Aryal2013 ER - TY - JOUR AU - Wegener, K. M. AU - Singh, A. K. AU - Jacobs, J. M. AU - Elvitigala, T. AU - Welsh, E. A. AU - Keren, N. AU - Gritsenko, M. A. AU - Ghosh, B. K. AU - Camp, D. G. AU - Smith, R. D. PY - 2010 DA - 2010// TI - Global proteomics reveal an atypical strategy for carbon/nitrogen assimilation by a cyanobacterium under diverse environmental perturbations JO - MCP VL - 9 ID - Wegener2010 ER - TY - JOUR AU - Allen, M. M. PY - 1968 DA - 1968// TI - Simple conditions for growth of unicellular blue-green algae on plates JO - J Phycol VL - 4 UR - https://doi.org/10.1111/j.1529-8817.1968.tb04667.x DO - 10.1111/j.1529-8817.1968.tb04667.x ID - Allen1968 ER - TY - JOUR AU - Welkie, D. G. AU - Sherman, D. M. AU - Chrisler, W. B. AU - Orr, G. AU - Sherman, L. A. PY - 2013 DA - 2013// TI - Analysis of carbohydrate storage granules in the diazotrophic cyanobacterium Cyanothece sp. PCC 7822 JO - Photosynth Res VL - 118 UR - https://doi.org/10.1007/s11120-013-9941-z DO - 10.1007/s11120-013-9941-z ID - Welkie2013 ER - TY - JOUR AU - Kogenaru, S. AU - Qing, Y. AU - Guo, Y. AU - Wang, N. PY - 2012 DA - 2012// TI - RNA-seq and microarray complement each other in transcriptome profiling JO - BMC Genomics VL - 13 UR - https://doi.org/10.1186/1471-2164-13-629 DO - 10.1186/1471-2164-13-629 ID - Kogenaru2012 ER - TY - JOUR AU - van Vliet, A. H. PY - 2010 DA - 2010// TI - Next generation sequencing of microbial transcriptomes: challenges and opportunities JO - FEMS Microbiol Lett VL - 302 UR - https://doi.org/10.1111/j.1574-6968.2009.01767.x DO - 10.1111/j.1574-6968.2009.01767.x ID - van Vliet2010 ER - TY - JOUR AU - Wang, Z. AU - Gerstein, M. AU - Snyder, M. PY - 2009 DA - 2009// TI - RNA-Seq: a revolutionary tool for transcriptomics JO - Nat Rev Genet VL - 10 UR - https://doi.org/10.1038/nrg2484 DO - 10.1038/nrg2484 ID - Wang2009 ER - TY - JOUR AU - Colon-Lopez, M. AU - Sherman, D. M. AU - Sherman, L. A. PY - 1997 DA - 1997// TI - Transcriptional and translational regulation of nitrogenase in light–dark- and continuous-light grown cultures of the unicellular cyanobacterium Cyanothece sp. strain ATCC 51142 JO - J Bacteriol VL - 179 ID - Colon-Lopez1997 ER - TY - JOUR AU - Grissa, I. AU - Vergnaud, G. AU - Pourcel, C. PY - 2007 DA - 2007// TI - CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats JO - Nucleic Acids Res VL - 35 UR - https://doi.org/10.1093/nar/gkm360 DO - 10.1093/nar/gkm360 ID - Grissa2007 ER - TY - JOUR AU - Grissa, I. AU - Vergnaud, G. AU - Pourcel, C. PY - 2007 DA - 2007// TI - The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats JO - BMC Bioinformatics VL - 8 UR - https://doi.org/10.1186/1471-2105-8-172 DO - 10.1186/1471-2105-8-172 ID - Grissa2007 ER - TY - JOUR AU - Waldbauer, J. R. AU - Rodrigue, S. AU - Coleman, M. L. AU - Chisholm, S. W. PY - 2012 DA - 2012// TI - Transcriptome and proteome dynamics of a light–dark synchronized bacterial cell cycle JO - PLoS ONE VL - 7 UR - https://doi.org/10.1371/journal.pone.0043432 DO - 10.1371/journal.pone.0043432 ID - Waldbauer2012 ER - TY - JOUR AU - Murray, J. W. PY - 2012 DA - 2012// TI - Sequence variation at the oxygen-evolving centre of photosystem II: a new class of 'rogue' cyanobacterial D1 proteins JO - Photosynth Res VL - 110 UR - https://doi.org/10.1007/s11120-011-9714-5 DO - 10.1007/s11120-011-9714-5 ID - Murray2012 ER - TY - JOUR AU - Summerfield, T. C. AU - Toepel, J. AU - Sherman, L. A. PY - 2008 DA - 2008// TI - Low-oxygen induction of normally cryptic psbA genes in cyanobacteria JO - Biochemistry VL - 47 UR - https://doi.org/10.1021/bi8018916 DO - 10.1021/bi8018916 ID - Summerfield2008 ER - TY - JOUR AU - Zhang, X. AU - Sherman, L. A. PY - 2012 DA - 2012// TI - Alternate copies of D1 are used by cyanobacteria under different environmental conditions JO - Photosynth Res VL - 114 UR - https://doi.org/10.1007/s11120-012-9783-0 DO - 10.1007/s11120-012-9783-0 ID - Zhang2012 ER - TY - JOUR AU - Barrangou, R. AU - Fremaux, C. AU - Deveau, H. AU - Richards, M. AU - Boyaval, P. AU - Moineau, S. AU - Romero, D. A. AU - Horvath, P. PY - 2007 DA - 2007// TI - CRISPR provides acquired resistance against viruses in prokaryotes JO - Science VL - 315 UR - https://doi.org/10.1126/science.1138140 DO - 10.1126/science.1138140 ID - Barrangou2007 ER - TY - JOUR AU - Bikard, D. AU - Jiang, W. Y. AU - Samai, P. AU - Hochschild, A. AU - Zhang, F. AU - Marraffini, L. A. PY - 2013 DA - 2013// TI - Programmable repression and activation of bacterial gene expression using an engineered CRISPR-Cas system JO - Nucleic Acids Res VL - 41 UR - https://doi.org/10.1093/nar/gkt520 DO - 10.1093/nar/gkt520 ID - Bikard2013 ER - TY - CHAP AU - Chylinski, K. AU - Makarova, K. S. AU - Charpentier, E. AU - Koonin, E. V. PY - 2014 DA - 2014// TI - Classification and evolution of type II CRISPR-Cas systems BT - Nucl Acids Res ID - Chylinski2014 ER - TY - JOUR AU - Garneau, J. E. AU - Dupuis, M. E. AU - Villion, M. AU - Romero, D. A. AU - Barrangou, R. AU - Boyaval, P. AU - Fremaux, C. AU - Horvath, P. AU - Magadan, A. H. AU - Moineau, S. PY - 2010 DA - 2010// TI - The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA JO - Nature VL - 468 UR - https://doi.org/10.1038/nature09523 DO - 10.1038/nature09523 ID - Garneau2010 ER - TY - JOUR AU - Makarova, K. S. AU - Haft, D. H. AU - Barrangou, R. AU - Brouns, S. J. AU - Charpentier, E. AU - Horvath, P. AU - Moineau, S. AU - Mojica, F. J. AU - Wolf, Y. I. AU - Yakunin, A. F. PY - 2011 DA - 2011// TI - Evolution and classification of the CRISPR-Cas systems JO - Nat Rev Microbiol VL - 9 UR - https://doi.org/10.1038/nrmicro2577 DO - 10.1038/nrmicro2577 ID - Makarova2011 ER - TY - JOUR AU - Marraffini, L. A. AU - Sontheimer, E. J. PY - 2008 DA - 2008// TI - CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA JO - Science VL - 322 UR - https://doi.org/10.1126/science.1165771 DO - 10.1126/science.1165771 ID - Marraffini2008 ER - TY - JOUR AU - Ludwig, M. AU - Bryant, D. A. PY - 2011 DA - 2011// TI - Transcription Profiling of the Model Cyanobacterium Synechococcus sp. Strain PCC 7002 by Next-Gen (SOLiD) Sequencing of cDNA JO - Front Microbiol VL - 2 UR - https://doi.org/10.3389/fmicb.2011.00041 DO - 10.3389/fmicb.2011.00041 ID - Ludwig2011 ER - TY - JOUR AU - Flaherty, B. L. AU - Van Nieuwerburgh, F. AU - Head, S. R. AU - Golden, J. W. PY - 2011 DA - 2011// TI - Directional RNA deep sequencing sheds new light on the transcriptional response of Anabaena sp. strain PCC 7120 to combined-nitrogen deprivation JO - BMC Genomics VL - 12 UR - https://doi.org/10.1186/1471-2164-12-332 DO - 10.1186/1471-2164-12-332 ID - Flaherty2011 ER - TY - JOUR AU - Harke, M. J. AU - Gobler, C. J. PY - 2013 DA - 2013// TI - Global transcriptional responses of the toxic cyanobacterium, Microcystis aeruginosa, to nitrogen stress, phosphorus stress, and growth on organic matter JO - PLoS ONE VL - 8 UR - https://doi.org/10.1371/journal.pone.0069834 DO - 10.1371/journal.pone.0069834 ID - Harke2013 ER - TY - JOUR AU - Wu, B. AU - Zhang, B. AU - Feng, X. AU - Rubens, J. R. AU - Huang, R. AU - Hicks, L. M. AU - Pakrasi, H. B. AU - Tang, Y. J. PY - 2010 DA - 2010// TI - Alternative isoleucine synthesis pathway in cyanobacterial species JO - Microbiology VL - 156 UR - https://doi.org/10.1099/mic.0.031799-0 DO - 10.1099/mic.0.031799-0 ID - Wu2010 ER - TY - JOUR AU - Lan, E. I. AU - Liao, J. C. PY - 2012 DA - 2012// TI - Metabolic engineering of cyanobacteria for 1-butanol production from carbon dioxide (vol 13, pg 353, 2011) JO - Metab Eng VL - 14 UR - https://doi.org/10.1016/j.ymben.2011.11.001 DO - 10.1016/j.ymben.2011.11.001 ID - Lan2012 ER - TY - JOUR AU - Atsumi, S. AU - Higashide, W. AU - Liao, J. C. PY - 2009 DA - 2009// TI - Direct photosynthetic recycling of carbon dioxide to isobutyraldehyde JO - Nat Biotechnol VL - 27 UR - https://doi.org/10.1038/nbt.1586 DO - 10.1038/nbt.1586 ID - Atsumi2009 ER - TY - JOUR AU - Bikard, D. AU - Jiang, W. AU - Samai, P. AU - Hochschild, A. AU - Zhang, F. AU - Marraffini, L. A. PY - 2013 DA - 2013// TI - Programmable repression and activation of bacterial gene expression using an engineered CRISPR-Cas system JO - Nucleic Acids Res VL - 41 UR - https://doi.org/10.1093/nar/gkt520 DO - 10.1093/nar/gkt520 ID - Bikard2013 ER - TY - JOUR AU - Qi, L. S. AU - Larson, M. H. AU - Gilbert, L. A. AU - Doudna, J. A. AU - Weissman, J. S. AU - Arkin, A. P. AU - Lim, W. A. PY - 2013 DA - 2013// TI - Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression JO - Cell VL - 152 UR - https://doi.org/10.1016/j.cell.2013.02.022 DO - 10.1016/j.cell.2013.02.022 ID - Qi2013 ER - TY - JOUR AU - Livesay, E. A. AU - Tang, K. AU - Taylor, B. K. AU - Buschbach, M. A. AU - Hopkins, D. F. AU - LaMarche, B. L. AU - Zhao, R. AU - Shen, Y. AU - Orton, D. J. AU - Moore, R. J. PY - 2008 DA - 2008// TI - Fully automated four-column capillary LC-MS system for maximizing throughput in proteomic analyses JO - Anal Chem VL - 80 UR - https://doi.org/10.1021/ac701727r DO - 10.1021/ac701727r ID - Livesay2008 ER - TY - JOUR AU - Kelly, R. T. AU - Page, J. S. AU - Luo, Q. AU - Moore, R. J. AU - Orton, D. J. AU - Tang, K. AU - Smith, R. D. PY - 2006 DA - 2006// TI - Chemically etched open tubular and monolithic emitters for nanoelectrospray ionization mass spectrometry JO - Anal Chem VL - 78 UR - https://doi.org/10.1021/ac061133r DO - 10.1021/ac061133r ID - Kelly2006 ER - TY - JOUR AU - Kim, S. AU - Gupta, N. AU - Pevzner, P. A. PY - 2008 DA - 2008// TI - Spectral probabilities and generating functions of tandem mass spectra: a strike against decoy databases JO - J Proteome Res VL - 7 UR - https://doi.org/10.1021/pr8001244 DO - 10.1021/pr8001244 ID - Kim2008 ER - TY - JOUR AU - Elias, J. E. AU - Gygi, S. P. PY - 2007 DA - 2007// TI - Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry JO - Nat Methods VL - 4 UR - https://doi.org/10.1038/nmeth1019 DO - 10.1038/nmeth1019 ID - Elias2007 ER - TY - JOUR AU - Qian, W. J. AU - Liu, T. AU - Monroe, M. E. AU - Strittmatter, E. F. AU - Jacobs, J. M. AU - Kangas, L. J. AU - Petritis, K. AU - Camp, D. G. AU - Smith, R. D. PY - 2005 DA - 2005// TI - Probability-based evaluation of peptide and protein identifications from tandem mass spectrometry and SEQUEST analysis: the human proteome JO - J Proteome Res VL - 4 UR - https://doi.org/10.1021/pr0498638 DO - 10.1021/pr0498638 ID - Qian2005 ER - TY - JOUR AU - Kim, S. AU - Gupta, N. AU - Pevzner, P. A. PY - 2008 DA - 2008// TI - Spectral probabilities and generating functions of tandem mass spectra: a strike against decoy databases JO - J Proteome Res VL - 7 UR - https://doi.org/10.1021/pr8001244 DO - 10.1021/pr8001244 ID - Kim2008 ER - TY - JOUR AU - Polpitiya, A. D. AU - Qian, W. J. AU - Jaitly, N. AU - Petyuk, V. A. AU - Adkins, J. N. AU - Camp, D. G. AU - Anderson, G. A. AU - Smith, R. D. PY - 2008 DA - 2008// TI - DAnTE: a statistical tool for quantitative analysis of -omics data JO - Bioinformatics VL - 24 UR - https://doi.org/10.1093/bioinformatics/btn217 DO - 10.1093/bioinformatics/btn217 ID - Polpitiya2008 ER -